Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5979
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0462 + 9583558-9584910                                           89   3e-18
07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432     32   0.55 
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009           31   1.3  
11_06_0416 + 23307984-23308281,23310083-23310900                       29   5.2  
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861           29   5.2  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     28   9.0  
02_04_0266 - 21415912-21418563                                         28   9.0  

>09_02_0462 + 9583558-9584910
          Length = 450

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 39/59 (66%), Positives = 49/59 (83%)
 Frame = +1

Query: 520 RFEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNGSHDS 696
           + EG+GNGIKT IVNM ++AKAL RPA+Y TKYFGCELGAQ++FD K    +VNG+HD+
Sbjct: 26  KIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGISLVNGAHDT 84



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 471 NVSDAFYRYKMPRICAKVRREG 536
           N  DAFYRYKMPR+  K+   G
Sbjct: 10  NRDDAFYRYKMPRMITKIEGRG 31


>07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432
          Length = 996

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 226 WLC*ASCTLDGWRPFLLWQHTDYSPRTVLMFLNILLKSYKTVTPRWTRALR 74
           WL    C LD W+  +   H +     VL  + ILL   K++TP++  +LR
Sbjct: 127 WLIAIVCILDVWKLLIPLPHKNVMAAVVLYAMIILLILGKSMTPKFQPSLR 177


>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
          Length = 431

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -3

Query: 365 TGSSRSVRVRCSAGPGPAAVASHVCRSGSNFRCLLLQNFDVLRTVYLVVLSVMHPRRLAA 186
           T ++ +     SA   P+A++S +   G +FR + ++    L   YL   SV+ PR LAA
Sbjct: 135 TATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRK---LSGCYLHCHSVLDPRTLAA 191

Query: 185 V 183
           V
Sbjct: 192 V 192


>11_06_0416 + 23307984-23308281,23310083-23310900
          Length = 371

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 560 TMTVLMPFPFPSNLGAYPRHLVPVERIGDVTVHV*GTHF 444
           T+  L+  P PS++GA+   L+      DV +HV G  F
Sbjct: 174 TVKKLVGVPLPSDIGAHLGRLLAAGHGADVAIHVGGETF 212


>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
          Length = 592

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 99  VTVLYDFSKIFRNISTVRGE*SVCCHRRN 185
           + V+ DF+ IFR +  + G   V CH RN
Sbjct: 149 IAVMRDFTDIFRKLLGIPGSAHVGCHGRN 177


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 133 ETSVLCAE---SSRCVATGGTAASRRGCMTLNTTRYTVRRTSKFCSNRHR 273
           E S LC +       +  GG    R  C  + TTR+++ + +++C+  HR
Sbjct: 157 EESGLCDDVIAHDAAMLNGGFEIGRVFCFRVETTRWSLEQLNRWCAALHR 206


>02_04_0266 - 21415912-21418563
          Length = 883

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 588 QRLGDFRHVDDDRLDAVPLPFEPWRISAASC 496
           QR G        R + VP  F PW++S A C
Sbjct: 794 QRTGGHLKCHITRCEDVPRKFSPWKLSMAPC 824


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,273,167
Number of Sequences: 37544
Number of extensions: 471889
Number of successful extensions: 1262
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)