Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5979
(745 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64857-14|AAL16313.1| 402|Caenorhabditis elegans Hypothetical p... 103 1e-22
U64857-13|AAC25859.2| 436|Caenorhabditis elegans Hypothetical p... 103 1e-22
U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical p... 103 1e-22
AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical ... 31 1.1
AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical ... 31 1.1
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 4.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 4.6
Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical pr... 28 8.0
U13070-21|AAC46647.1| 133|Caenorhabditis elegans Hypothetical p... 28 8.0
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 28 8.0
>U64857-14|AAL16313.1| 402|Caenorhabditis elegans Hypothetical
protein C37C3.2b protein.
Length = 402
Score = 103 bits (248), Expect = 1e-22
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +1
Query: 520 RFEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNGSHDS 696
+ EGKGNGIKTVI NM E+AKAL RP YPTKYFGCELGAQT FD KNER+IVNG HD+
Sbjct: 24 KVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDA 82
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 453 SLNVNRNVSDAFYRYKMPRICAKVRREG 536
+LNVNR V+D FYRYKMP++ AKV +G
Sbjct: 2 ALNVNRAVADPFYRYKMPKLSAKVEGKG 29
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 701 KLQDLLDGFIRKFVL 745
KLQD+LDGFI+KFVL
Sbjct: 84 KLQDILDGFIKKFVL 98
>U64857-13|AAC25859.2| 436|Caenorhabditis elegans Hypothetical
protein C37C3.2a protein.
Length = 436
Score = 103 bits (248), Expect = 1e-22
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +1
Query: 520 RFEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNGSHDS 696
+ EGKGNGIKTVI NM E+AKAL RP YPTKYFGCELGAQT FD KNER+IVNG HD+
Sbjct: 24 KVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDA 82
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 453 SLNVNRNVSDAFYRYKMPRICAKVRREG 536
+LNVNR V+D FYRYKMP++ AKV +G
Sbjct: 2 ALNVNRAVADPFYRYKMPKLSAKVEGKG 29
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 701 KLQDLLDGFIRKFVL 745
KLQD+LDGFI+KFVL
Sbjct: 84 KLQDILDGFIKKFVL 98
>U64857-12|AAN84849.1| 413|Caenorhabditis elegans Hypothetical
protein C37C3.2c protein.
Length = 413
Score = 103 bits (248), Expect = 1e-22
Identities = 46/59 (77%), Positives = 50/59 (84%)
Frame = +1
Query: 520 RFEGKGNGIKTVIVNMPEVAKALGRPATYPTKYFGCELGAQTQFDFKNERFIVNGSHDS 696
+ EGKGNGIKTVI NM E+AKAL RP YPTKYFGCELGAQT FD KNER+IVNG HD+
Sbjct: 24 KVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAKNERYIVNGEHDA 82
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 453 SLNVNRNVSDAFYRYKMPRICAKVRREG 536
+LNVNR V+D FYRYKMP++ AKV +G
Sbjct: 2 ALNVNRAVADPFYRYKMPKLSAKVEGKG 29
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 701 KLQDLLDGFIRKFVL 745
KLQD+LDGFI+KFVL
Sbjct: 84 KLQDILDGFIKKFVL 98
>AF099927-3|AAZ32795.1| 893|Caenorhabditis elegans Hypothetical
protein T04C4.1b protein.
Length = 893
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 585 RLGDFRHVDDDRLDAVPL--PFEPWRISAASCTGRTHRRRYGSRLRNPF 445
R +HVD+D++ VP PF P +S + T H+ + +L+N +
Sbjct: 555 RCSAVQHVDNDKMWEVPTEQPFSPCDVSNSPSTSCAHQHQQQQQLKNGY 603
>AF099927-1|AAZ32794.1| 955|Caenorhabditis elegans Hypothetical
protein T04C4.1a protein.
Length = 955
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 585 RLGDFRHVDDDRLDAVPL--PFEPWRISAASCTGRTHRRRYGSRLRNPF 445
R +HVD+D++ VP PF P +S + T H+ + +L+N +
Sbjct: 616 RCSAVQHVDNDKMWEVPTEQPFSPCDVSNSPSTSCAHQHQQQQQLKNGY 664
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 563 LTMTVLMPFPFPSNLGAYPRHLVPVERIGDVTVHV*GTHFGRVVGFCLLP 414
+T+T PF + L + +VP R G + V V G++ + GFCL P
Sbjct: 602 VTITKAQPFITEAPLAPQGKKIVPGGRCGPIDVCVGGSNC--IEGFCLCP 649
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -3
Query: 563 LTMTVLMPFPFPSNLGAYPRHLVPVERIGDVTVHV*GTHFGRVVGFCLLP 414
+T+T PF + L + +VP R G + V V G++ + GFCL P
Sbjct: 699 VTITKAQPFITEAPLAPQGKKIVPGGRCGPIDVCVGGSNC--IEGFCLCP 746
>Z92786-3|CAB63202.1| 488|Caenorhabditis elegans Hypothetical
protein F47H4.6 protein.
Length = 488
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 48 EARINNSSSRRALVHLGVTVLYDFSKIFRNISTVRGE*SVCCHRRNGRQPSRVH 209
EAR+ SS R +++ + V +L+ FSKI ++ T+ ++ + R PS H
Sbjct: 383 EARVFESS-RNSILQIYVGILFHFSKIDVSLKTLSNSNAIQMRDKLLRSPSFEH 435
>U13070-21|AAC46647.1| 133|Caenorhabditis elegans Hypothetical
protein F01F1.14 protein.
Length = 133
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 546 DAVPLPFEPWRISAASCTGRTHRRRYGSRLRNPFWT 439
D V LP + R+S S THR Y + N FWT
Sbjct: 76 DDVALPIQKRRVSQESQFCATHRESYDTYCNN-FWT 110
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +1
Query: 430 PTTRPKWVP*T*TVTSPMRSTGTRCRGYAPRFEGKGNGIKTVIVNMPEVAKA-LGRPATY 606
PTT P+ T TSP +ST T P + N + P+ AK + P T
Sbjct: 231 PTTSPQKPDSTEEATSPSQSTTTPVATQNPTTSNQKNETTDEATSSPQSAKTPVTNPTTS 290
Query: 607 PTK 615
P K
Sbjct: 291 PQK 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,534,434
Number of Sequences: 27780
Number of extensions: 380970
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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