Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5979
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 492 RYKMPRICAKVRREGERHQDGHRQ 563
           RYK PR   + R    RH D +++
Sbjct: 158 RYKRPRTTFEPRATDSRHYDRYKE 181


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -2

Query: 681 VDNETLILEVKLSLGTQFTTKVLCWVRGWSPQRLGDFRHVDDDRLDAVPLPFEPWRISAA 502
           +D++  +LEV LSLG++  +          PQ +G       +R       F    +S  
Sbjct: 671 LDDDDTLLEVALSLGSEALSAATVRFIEAEPQPIGKALSKCHNRNVTTCNMFRKTNLSGD 730

Query: 501 SCTGRT 484
           S +G T
Sbjct: 731 SSSGTT 736


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 537 PLPFEPWR--ISAASCTGRTHRRRY 469
           PLP EPW   ++A       ++ RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 167 VLPQEERPPAVEG 205
           V PQEERP  + G
Sbjct: 219 VSPQEERPKGING 231


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 537 PLPFEPWR--ISAASCTGRTHRRRY 469
           PLP EPW   ++A       ++ RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 167 VLPQEERPPAVEG 205
           V PQEERP  + G
Sbjct: 214 VSPQEERPKGING 226


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 582 GAGETSHVPNKVLWL 626
           G  +T HVP++ +WL
Sbjct: 90  GGVDTLHVPSEHIWL 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,474
Number of Sequences: 438
Number of extensions: 4930
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)