Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5978
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1084 - 24232968-24234779                                         30   1.6  
02_05_0496 - 29499959-29500653,29501039-29501093                       30   2.2  
01_01_0378 - 2953514-2954341,2954388-2954504                           29   3.8  
11_06_0610 - 25449085-25453284                                         29   5.0  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    29   5.0  
07_03_0497 + 18777377-18777592,18777691-18778512                       28   6.6  
03_05_0713 - 27070063-27070126,27070202-27070290,27070369-270704...    28   6.6  
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110...    28   8.7  
08_02_0839 + 21693348-21694853                                         28   8.7  

>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 505 VPTRADSQEVLPPGPEQNQPAVQERDKPPP 594
           +P +    + LPP P+Q QP  Q    PPP
Sbjct: 68  LPQKQPPSQQLPPPPQQQQPPPQHSLPPPP 97


>02_05_0496 - 29499959-29500653,29501039-29501093
          Length = 249

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 421 RSQYSYKGCPTFQTETHYCFTAEIGGVVVPTRADSQEVLPPG--PEQNQPAVQERDKPPP 594
           R  Y+    P   TET+Y     +   V  + A+S  V+PP   P Q  P  Q +  PPP
Sbjct: 28  RLDYAMAYPPGPPTETYYM--RPVARTVTFSAANSVYVIPPAEPPHQQSPEPQPQTPPPP 85


>01_01_0378 - 2953514-2954341,2954388-2954504
          Length = 314

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = -1

Query: 255 WVGGESAMGFSRQSFRGQSAPYARRSLSSMAPGSDI 148
           W+ G++A+G     +  +SA +AR  +S ++ G+++
Sbjct: 135 WLRGQAALGAGADPWLAESADFARTFISGLSAGANL 170


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 526  QEVLPPGPEQNQPAVQERDKPPP 594
            +E +PP P ++ P   E+ +PPP
Sbjct: 1012 EEYMPPSPVKSSPPPAEKSQPPP 1034


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 355 LNTRWAVSSSTHLSKKKRKKSLWHRPDCL 269
           LN  W+ + S+ ++ K RKK L  R D L
Sbjct: 11  LNCMWSAARSSRIASKTRKKVLMDRSDAL 39


>07_03_0497 + 18777377-18777592,18777691-18778512
          Length = 345

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 24  GQLVTNKNDPAALKLGTKKPCSCFALMNPFTVT 122
           G L  ++ D A    GTK     F L NPFT T
Sbjct: 17  GWLALHRTDAATTAAGTKTKRHTFFLHNPFTAT 49


>03_05_0713 -
           27070063-27070126,27070202-27070290,27070369-27070428,
           27071110-27071215,27071309-27071428,27072340-27072476,
           27072561-27072647,27073660-27073956
          Length = 319

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 439 KGCPTFQTETHYCFTAEIGGVVVPTRADSQEVLPPGPE 552
           + CP  + E+    T +    V P+  D++E++ P PE
Sbjct: 253 RNCPKAKVESSVVATEQSNAAVSPSGIDNKELVVPNPE 290


>10_01_0089 +
           1103841-1104152,1104809-1104946,1105527-1105631,
           1106403-1106577,1107124-1107398,1108222-1108391,
           1108508-1109084
          Length = 583

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 569 FKNAINHRQFTHSPTVFLLNKY 634
           F++ I H  F  +P V LLNKY
Sbjct: 450 FEDVIRHPSFEDTPCVLLLNKY 471


>08_02_0839 + 21693348-21694853
          Length = 501

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +1

Query: 466 THYCFTAEIGGVVVPTRADSQ---EVLPPGPEQNQPAVQERDKPPP 594
           +HY   A I    +P  +  Q     LPP P   QP + +   PPP
Sbjct: 2   SHYTMHAHINYTALPPTSPLQLPLPYLPPPPPPPQPPLLQLQPPPP 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,336,723
Number of Sequences: 37544
Number of extensions: 477139
Number of successful extensions: 1144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)