Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5978
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-16|CAB16530.2|  404|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical...    29   3.4  

>Z99281-16|CAB16530.2|  404|Caenorhabditis elegans Hypothetical
           protein Y57G11C.31 protein.
          Length = 404

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 515 VRTHKRFYHQDRNRTSLQFKNAIN--HRQFTHSPTVFLLNKYIDKAKELVVCLVKT-NGA 685
           V+TH           S +F + I+   R+F+  P +FLLN+Y     +  +C   T +GA
Sbjct: 66  VKTHGETVSLSSIEESREFADLIDTLDRKFSRPPAIFLLNQYALNMTDNFLCNTATLDGA 125

Query: 686 H 688
           H
Sbjct: 126 H 126


>Z70287-1|CAA94302.3|  294|Caenorhabditis elegans Hypothetical
           protein R09E10.1 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 508 PTRADSQ-EVLPPGPEQNQPAVQERDKPPP 594
           P + DS+ EV+P GP+Q    +++  K PP
Sbjct: 9   PEKKDSENEVVPAGPKQKAKCLEKETKSPP 38


>U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical
           protein B0416.2 protein.
          Length = 167

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 104 ESIYGYLINGSLVRVMSDPG 163
           E +YG+LINGSLV ++   G
Sbjct: 66  EPVYGHLINGSLVEILQASG 85


>AF067219-15|AAC17023.2|  802|Caenorhabditis elegans Hypothetical
           protein R12E2.2 protein.
          Length = 802

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 481 TAEIGGVVVPTRADSQEVLPPGPEQNQPAVQERDKPPPI 597
           T +   +  PT   S+EV PP  EQ Q ++  + K  PI
Sbjct: 434 TPKAENIEKPTEKPSEEVKPPAREQPQVSLPPKPKSEPI 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,115,488
Number of Sequences: 27780
Number of extensions: 367790
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)