Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5978
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.55 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.8  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 106 IHLRLPDQWFISPRYVGSRRH*R*TTPCVRRGLPT 210
           + +++P +W + P  V   R+      C  +G+PT
Sbjct: 704 LQVKVPPRWIVEPTDVSVERNKHVALHCQAQGVPT 738


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 112 LRLPDQWFISPRYVGSRRH*R*TTPCVRRGLPT 210
           + +P +W + P  V   R+      C  +G+PT
Sbjct: 702 VHVPPRWIVEPTDVSVERNKHVALHCQAQGVPT 734


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = -2

Query: 263 AVYGS-AENQRWGLVGN 216
           A+ G+  EN  WG VGN
Sbjct: 407 AIAGTICENSAWGFVGN 423


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 291 CGIDRTACHSG 259
           C + R ACHSG
Sbjct: 129 CELHRAACHSG 139


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 515 VRTHKRFYHQDRNRTSLQFKNAINHRQ 595
           +R HK  YH+  ++   Q K     R+
Sbjct: 48  LRNHKSIYHRQHSKNEQQRKEMEQMRE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,134
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)