Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5977
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   0.71 
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    25   3.8  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   5.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.0  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    24   8.7  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 92  YTRRL*SKRSLN**YFNKKPHYNISKDK 175
           Y RRL  KR L   Y N++ +Y++ KD+
Sbjct: 598 YIRRLREKRELEKQYQNRRGYYDVGKDE 625


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 3   FIFILPFNYVWCMGPISLFNEFSISFKLYCI 95
           F+F      VW   PIS   E SISF  Y I
Sbjct: 177 FLFQRLVQSVWNDNPISALAELSISFLSYSI 207


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
 Frame = +2

Query: 173 KFSTVPMPAVSASLAYIYIHCSQNSFLLKESAS---------MPKNIL**KLPKYSLMNL 325
           K S   +  +  S  ++ ++ S  S LLKE  S          P+NIL  K+     + L
Sbjct: 406 KISDAILLRLPDSQTFVQLYSSTESDLLKEGLSRILLYFFTYFPENILKLKIDTSIFLRL 465

Query: 326 D*ILNLITGTIQVQNLENLSKIYLVLPKFK 415
           D    ++       ++EN+ +I   LP+ K
Sbjct: 466 DLSPGMLDRPFSRLHVENIIQILRYLPEVK 495


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 12   ILPFNYVWCMGPISLFNEFSISFKLYCIRGDCKVKE 119
            +LP N  W    IS  N+F     LY    D K ++
Sbjct: 1256 LLPTNTKWLHASISQTNDFDTIMHLYTSMVDIKARQ 1291


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 341 NSKFNP--NSLMSI*VIFIKEYF*AC 270
           NS FNP     + I V+F KEYF  C
Sbjct: 190 NSIFNPLLTWTLDISVVFFKEYFAYC 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,381
Number of Sequences: 5004
Number of extensions: 32328
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)