Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5977
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           29   1.2  
11_06_0126 - 20378611-20379719,20380081-20381239                       27   8.5  
07_03_0462 + 18444928-18444999,18446948-18447985,18448015-184488...    27   8.5  
02_01_0523 - 3792864-3792962,3793509-3793610,3793861-3793974,379...    27   8.5  

>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 341 LITGTIQVQNLENLSKIYL 397
           ++TG ++V NLENL +IY+
Sbjct: 315 MVTGEVEVHNLENLGEIYM 333


>11_06_0126 - 20378611-20379719,20380081-20381239
          Length = 755

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +2

Query: 311 SLMNLD*ILNLITG--TIQVQNLENLSKIYLVLPKFKNTG 424
           +L+ LD  +NLITG   +++ N+E ++  YL +   K +G
Sbjct: 367 NLVTLDMSINLITGPLPVEIANMETMAMEYLDIRSNKLSG 406


>07_03_0462 +
           18444928-18444999,18446948-18447985,18448015-18448845,
           18449112-18449120
          Length = 649

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 197 AVSASLAYIYIHCSQNSFLLKESASMPKNIL 289
           A+  + A +Y+HCSQN  +L      P NIL
Sbjct: 178 ALDVAEALVYMHCSQNHPILHGDIK-PSNIL 207


>02_01_0523 -
           3792864-3792962,3793509-3793610,3793861-3793974,
           3794060-3794158,3794725-3794779,3795266-3795433,
           3795668-3795735,3796133-3796195,3796425-3796703
          Length = 348

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  YVWCMGPISLFNEFSISFKLYCI 95
           Y+WC+ P+ L   FS+ F  + +
Sbjct: 174 YLWCIDPLGLATLFSLRFTTFSV 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,194,147
Number of Sequences: 37544
Number of extensions: 151388
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)