Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5977
         (429 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide recepto...    24   2.0  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   3.5  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   4.6  

>AY299455-1|AAQ73620.1|  493|Anopheles gambiae FMRF amide receptor
           protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 138 LIRSLTIIFLKTNLVLFLCLLYQHH*PIYTF---IAPKI 245
           L R  T++ L + L+  LC +Y H   +Y +   I PKI
Sbjct: 124 LARCDTVLILTSVLIFGLCAIYPHTGYLYYYHYQIFPKI 162


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 5    YLYFTFQLCLVYGSYFT 55
            Y+Y  F   +++GS+FT
Sbjct: 1539 YMYLYFVFFIIFGSFFT 1555


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 173 KFSTVPMPAVSASLAYIYIHCSQNSFLLKESASMP 277
           KFST+P+ A   +    Y   +  +F L  SA +P
Sbjct: 853 KFSTLPILACGQNNVCNYASRNDRTFWLSTSAPIP 887


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,932
Number of Sequences: 2352
Number of extensions: 6795
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 35292513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)