Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5977
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical pr...    33   0.11 
Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical pr...    33   0.11 
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    31   0.46 
U00033-10|AAC48299.1|  143|Caenorhabditis elegans Hypothetical p...    31   0.46 
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    31   0.46 
Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical pr...    26   10.0 
Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical p...    26   10.0 

>Z46933-6|CAA87038.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 27  YVWCMGPI----SLFNEFSISFKLYCIRGDCKVKEV*INSILIRSLTIIFLKTNLVLFLC 194
           YV+ + PI     +   FS+S  +YCI  +    E    S L R L  +F  T    F C
Sbjct: 169 YVYLLSPIFYVVMILTSFSLSALIYCIAHNLTHMEERQRSKLFRRLFFLFSSTLWTFFTC 228

Query: 195 LLYQ 206
           L Y+
Sbjct: 229 LPYR 232


>Z46829-2|CAA86863.3|  321|Caenorhabditis elegans Hypothetical
           protein T14B1.2 protein.
          Length = 321

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +3

Query: 27  YVWCMGPI----SLFNEFSISFKLYCIRGDCKVKEV*INSILIRSLTIIFLKTNLVLFLC 194
           YV+ + PI     +   FS+S  +YCI  +    E    S L R L  +F  T    F C
Sbjct: 169 YVYLLSPIFYVVMILTSFSLSALIYCIAHNLTHMEERQRSKLFRRLFFLFSSTLWTFFTC 228

Query: 195 LLYQ 206
           L Y+
Sbjct: 229 LPYR 232


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
            F22E10.3 protein.
          Length = 1327

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 191  MPAVSASLAYIYIHCSQNSFLLKESASMPKNIL**KLPKYSLMNLD*ILNLITGTIQVQN 370
            + A+ A++A  +I+C Q   L      +   ++     K SLMN++ I N   G I ++ 
Sbjct: 894  LAAIIANIAIAFIYCWQIGILGTSLILLLAFVMIGLAYKISLMNVEQIQNDDAGRIAIEI 953

Query: 371  LENLSKIYLV 400
            +EN+  I L+
Sbjct: 954  IENVKTIQLL 963


>U00033-10|AAC48299.1|  143|Caenorhabditis elegans Hypothetical
           protein F37C12.14 protein.
          Length = 143

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 3   FIFILPFNYVWCMGPISLFNEFSIS 77
           F +  P N +WC  P S++  FSIS
Sbjct: 34  FYYFAPLNGIWCPPPTSIYTFFSIS 58


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
            related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +2

Query: 191  MPAVSASLAYIYIHCSQNSFLLKESASMPKNIL**KLPKYSLMNLD*ILNLITGTIQVQN 370
            + A+ A++A  +I+C Q   L      +   ++     K SLMN++ I N   G I ++ 
Sbjct: 894  LAAIIANIAIAFIYCWQIGILGTSLILLLAFVMIGLAYKISLMNVEQIQNDDAGRIAIEI 953

Query: 371  LENLSKIYLV 400
            +EN+  I L+
Sbjct: 954  IENVKTIQLL 963


>Z81050-8|CAB02859.1|  371|Caenorhabditis elegans Hypothetical
           protein C50B6.10 protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 19  LSIMSGVWVLFH-FL-MNFQLVSSCTVY 96
           LS  +G+W+LF  FL M F +  SC+VY
Sbjct: 126 LSFFNGIWILFWIFLAMMFGVDWSCSVY 153


>Z70780-10|CAA94827.1|  330|Caenorhabditis elegans Hypothetical
           protein F46B6.11 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 4   LSLFYLSIMSGVWVLFHFLMNFQLV 78
           L +F L ++  VW  FH LM+F +V
Sbjct: 65  LDVFRLFLLMQVWKEFHVLMDFLIV 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,699
Number of Sequences: 27780
Number of extensions: 166608
Number of successful extensions: 355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)