Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5976
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   0.93 
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.6  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   6.5  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   8.7  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   8.7  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 564  FFFKWFLLLQRLRSMPKQFVFDDISFILLI-SIEKYCF*CTLSYVLHMN*KILRKQ 400
            FF K F L    +S     +F  + + LL  S + Y F    +++ H+N ++L ++
Sbjct: 1240 FFMKLFQLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNRR 1295


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 575 PPSSFFLNGSYCFKDYALCQNNSYLMILVL 486
           P  S   +G YC  +++L +N +YL+I+ L
Sbjct: 35  PLKSHRTHGHYCLLNFSLRENKNYLIIVYL 64


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 280 SSRGSNQCFSNTGPSKSSASLNLAPDRKRD 191
           +S G+N CFS    S   A  N+ P +  D
Sbjct: 144 NSNGTNNCFSTHPKSLDDAKDNVVPKKLND 173


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 440 ERVHQKQYFSMEINKIKLISSNTNCFGIERSL*SNRNHLKKNS 568
           E+  Q++YFS+  + +K  SSN     I+R+   +  +L K S
Sbjct: 677 EKNRQEKYFSVLNSVVKAESSNITRLPIKRTFYGDTRNLDKAS 719


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 563 FFLNGSYCF-KDYALCQNNSYLMILVLFY 480
           F LN  + + KDY LC N     +LV+ +
Sbjct: 101 FILNYKWIYRKDYNLCLNQKIAFVLVMLH 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,493
Number of Sequences: 5004
Number of extensions: 46715
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)