Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5976
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical pr...    31   0.49 
U58756-1|AAC48085.1|  314|Caenorhabditis elegans Hypothetical pr...    29   2.0  
L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin fam...    28   6.0  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z66500-8|CAE17939.1|  312|Caenorhabditis elegans Hypothetical
           protein T05C12.11 protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 369 IAFCFFIELRSAFAIFFNSCVVHRKEYIRNNIFQWKLIK*N*YHQIRI 512
           I   F + L  +F + +N+    +KEY + ++ Q KLI+ N +H I +
Sbjct: 5   ILLLFNVVLSVSFVLDYNNNFEIKKEYFQTDVIQEKLIRVNEWHDIPV 52


>U58756-1|AAC48085.1|  314|Caenorhabditis elegans Hypothetical
           protein F58F9.4 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 320 QGYQYR*EKKNDCDSKNCFLFFY*VEICFRNI-F*FMCST*ERVHQKQYFSMEINKIKLI 496
           +G+Q R + +N   + N F++   ++   R I F ++C   ER  Q  +FS   N  K  
Sbjct: 166 KGFQSRQQPENKIKTMNAFIYRV-IKKNHRTIYFLWIC---ERYEQAIFFSKTYNLTKNA 221

Query: 497 SSNTNCFGIERSL 535
            SN  CF   R +
Sbjct: 222 KSNWQCFKYVRQI 234


>L14745-8|AAA27923.1|  244|Caenorhabditis elegans Tetraspanin family
           protein 1 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 461 YFSMEINKIKLISSNTNCFGIERSL 535
           Y +  +N +K+I    NC GIE SL
Sbjct: 141 YTTNSVNDLKIIQDKYNCCGIENSL 165


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = -2

Query: 436 CTTHELKNIAKA-DLNSIKKQKAILRITVILFFLPILIALGGYFSFP----LTYL*VSSR 272
           C+ H + ++A++    +I     +L I+ +LF   I + +  YFSF     L    V S 
Sbjct: 61  CSWHGIPHMAQSLSWPTILLWTTLLIISAVLFVYLITVTVRQYFSFQKLVNLNIGMVESN 120

Query: 271 GSNQCFSNTGPSKSSA 224
             +  F NT P K SA
Sbjct: 121 FPSITFCNTNPYKLSA 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,284,035
Number of Sequences: 27780
Number of extensions: 258571
Number of successful extensions: 586
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)