Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5971
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 354 TILRSKFLKKQI*GALKARMHLFD*LMKSNRILFLRSIG 238
           T + S+    ++   L A   LFD L + NR+  + +IG
Sbjct: 434 TEICSRITPMEVVSMLNAMYSLFDTLTERNRVYKVETIG 472


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 31  NVPKDPTAVYRCVNFILVPL 90
           N+P+ P     C+ F L+P+
Sbjct: 199 NMPEFPLYQLSCILFFLIPM 218


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 66  ASINSCWVFGYVATKLEIFIFY 1
           A++ SCW+  Y    L   IFY
Sbjct: 66  AAVMSCWMNVYYIVILAWAIFY 87


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 176  TLAPPCPEISNTK*QRYIGSYNEVPTSS 93
            T +PP PE+ +   Q +   Y E  +S+
Sbjct: 1026 TWSPPLPELRHGDIQGFNVGYRETSSSN 1053


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 176  TLAPPCPEISNTK*QRYIGSYNEVPTSS 93
            T +PP PE+ +   Q +   Y E  +S+
Sbjct: 1022 TWSPPLPELRHGDIQGFNVGYRETSSSN 1049


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,004
Number of Sequences: 438
Number of extensions: 3777
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)