Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5968
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.0  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 431 NGWPLFDDFQWQTTDFIKNKLSYFYFSLLFNVFILFL 541
           +GW L  D+       ++NKL+YF   +  N +  FL
Sbjct: 206 SGWYLNHDYN------LENKLNYFIEDIGLNTYYFFL 236


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 431 NGWPLFDDFQWQTTDFIKNKLSYFYFSLLFNVFILFL 541
           +GW L  D+       ++NKL YF   +  N +  FL
Sbjct: 206 SGWYLNHDYN------LENKLIYFIEDIGLNTYYFFL 236


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -2

Query: 291 ICEIESKKNRH*LQMIYE*ITF 226
           +C +E+++N + L+ IYE +++
Sbjct: 109 LCNVEAEENYNLLEDIYETLSY 130


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 406 VCLFLSTSKRLAPF*RFSMAN 468
           V L L    R +PF RF +AN
Sbjct: 579 VALVLYLLDRFSPFGRFKLAN 599


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,852
Number of Sequences: 438
Number of extensions: 3828
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)