Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5967
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    25   7.5  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.5  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   9.9  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 209 NYLKYFYNHYYIILVLLYHIST 274
           +Y+K+F + +Y+  VLL+ ++T
Sbjct: 886 SYMKHFGSGFYVAAVLLFFVTT 907


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 224 FYNHYYIILVLLYHISTFVYY 286
           FY    I+L L+++I TFVYY
Sbjct: 332 FYGVRGILLKLIWNIYTFVYY 352


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 15  FFFRNHSFDIRLLKRCPDIEARLS 86
           FF  N S D+  L RC D  A LS
Sbjct: 150 FFISNTSIDLYSLMRCIDSHASLS 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,889
Number of Sequences: 5004
Number of extensions: 45935
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)