Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5964
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.7  
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|...    27   2.7  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   3.5  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    26   4.7  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   6.2  
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase...    25   8.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.1  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 169 PFNT-RWSVSSSNHLSKKKGVILDPVDRMVNSRRRPKHVIKGPPDPLTVHLGTSSGGHGP 345
           PFN   ++VSSS+ + KKKG     V   + +   P   I   P    V+L  S     P
Sbjct: 574 PFNVPSFTVSSSDQVQKKKG----NVPNAIETDSSPSDTISSSPTVRAVNLSPSKNQKPP 629


>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
           Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 145 VDVYGLQ*PFNTRWSVSSSNHLSKKKGVILDPVDRMVNSRRRPKHVIKGPP 297
           +DV+  + P N +WS S + ++ +  GV         + +   K VI   P
Sbjct: 74  IDVHNERDPANIKWSASGAEYVIESTGVFTTKETASAHLKGGAKRVIISAP 124


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 202 NHLSKKKGVILDPVDRMVNSRRRPKHVIKGPPDPLTV 312
           N +  + G+I     +   S    +H++  PP PLTV
Sbjct: 475 NEIYFRLGIIYKQQHKFAQSLELFRHILDNPPKPLTV 511


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 465  SLPPDRETRLTEKIRRETQWAVCYGLIYSSSHSAQATGSTR 343
            ++P ++    TE +RR    A+ YG I   SHS+ A    R
Sbjct: 927  AIPIEQVEPWTEIVRRFCTGAMSYGSISMESHSSLAIAMNR 967


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 342 SLSNPSLAPNGSTSIL 389
           +++ PS+ PNG+TSIL
Sbjct: 247 NMNKPSIPPNGNTSIL 262


>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
           Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 145 VDVYGLQ*PFNTRWSVSSSNHLSKKKGVILDPVDRMVNSRRRPKHVIKGPP 297
           +DV+  + P + +WS S ++++ +  GV         + +   K VI   P
Sbjct: 74  IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAP 124


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 517 LGILTFTSNTSNVLLLKVIPS 579
           L +L+F  N S   LLK++PS
Sbjct: 199 LAVLSFAQNDSTFSLLKLVPS 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,347
Number of Sequences: 5004
Number of extensions: 57511
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)