Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5964
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0479 - 3695245-3696588,3696705-3696965                           28   6.3  
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433...    28   6.3  
01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701     27   8.3  

>11_01_0479 - 3695245-3696588,3696705-3696965
          Length = 534

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 394 WVNIL--VEPFGASDGFDKDRDRRLRYLNAPL 305
           WV++   V    ASD FD+ R RRL+Y + P+
Sbjct: 201 WVDLCRGVILLSASDLFDESRPRRLKYTSLPV 232


>02_05_0922 -
           32742863-32742958,32743081-32743136,32743253-32743382,
           32743768-32743849,32744038-32744227,32744290-32744369,
           32744769-32744985,32745740-32745923
          Length = 344

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 229 ILDPVDRMVNSRRRPKHVIKGPP 297
           I+D +DR+ N  R P  ++ GPP
Sbjct: 58  IVDTIDRLTNENRLPHLLLYGPP 80


>01_06_0264 + 28005997-28006823,28007107-28007290,28007603-28007701
          Length = 369

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 341 P*PPLEVPKCTVNGSGGPLITCL---GRRR 261
           P PPL++P+C  + S GP  T     GRRR
Sbjct: 38  PVPPLQLPRCRCHRSEGPWRTTAAANGRRR 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,117
Number of Sequences: 37544
Number of extensions: 403798
Number of successful extensions: 819
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)