Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5964
         (584 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    27   7.4  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 23/66 (34%), Positives = 29/66 (43%)
 Frame = +3

Query: 237  SCGPNGKQSTSP*TRN*GSSRSINGAFRYLKRRSRSLSNPSLAPNGSTSILTHSTQPTEF 416
            S  PN  QSTSP T    SS   +G        S S S+   +  GSTS +  +T     
Sbjct: 1091 STSPNPSQSTSPSTSGATSSPGSSGTTLTSISPSPSQSSTIGSSQGSTSPVVSTTSGDMT 1150

Query: 417  LAGSSQ 434
              GS+Q
Sbjct: 1151 SQGSTQ 1156


>U23413-1|AAA64290.2|  182|Caenorhabditis elegans Hypothetical
           protein B0353.1 protein.
          Length = 182

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 297 RSINGAFRYLKRRSRSLSNPS--LAPNGSTSILTHSTQPTE 413
           RS +GA R ++++    S PS  L+P+ S+S  + S  PTE
Sbjct: 25  RSPSGAKRKIRQKREEASRPSPFLSPSSSSSQTSISPTPTE 65


>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 238 PVDRMVNSRRRPKHVIKGPPDP 303
           PV     +RRR +HV+  PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,935,645
Number of Sequences: 27780
Number of extensions: 334784
Number of successful extensions: 741
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)