Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5963
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.1  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   8.0  

>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 403 LGLSHRSQNKTAVLFTQLYRGHATRT 480
           LGL +RS   +  LFT  +R HAT T
Sbjct: 26  LGLRYRSDASSLHLFTPTWRDHATNT 51


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
 Frame = +3

Query: 288 GSKPQSSITPNSRREHCDIHRKDC*TNALHQADVARASLG----TIASISEQNSGTLHAI 455
           G   +S + P  R+E    H K+     L + D  R+S+          SE+ S      
Sbjct: 148 GKNFESILQPQKRKETRGFHSKNDDDGRLEERDDLRSSVDDDYYDYPRYSERKSLNSKRH 207

Query: 456 VP-----RARDQDSHSSRDPL*RHKN-----SPTIELRA*RHNRHRQHEAS*RFG-HQRK 602
           V      R R  DS+SS D L R ++     S   EL    +NRH + E   R+  H+R+
Sbjct: 208 VDNYNENRRRHYDSYSSYDELERRRSSNESYSRRSELPRRDYNRHDERE---RYSYHRRR 264

Query: 603 E 605
           E
Sbjct: 265 E 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,531
Number of Sequences: 5004
Number of extensions: 44886
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)