Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5963
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215...    31   0.90 
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   2.7  
11_01_0541 + 4275660-4275766,4275856-4275973,4276160-4276386,427...    29   4.8  
01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292           28   6.3  
11_02_0040 - 7665220-7666656                                           28   8.4  

>12_02_0803 +
           23318429-23318552,23318688-23319877,23320724-23321528,
           23321938-23322417,23322535-23322815,23323207-23323302,
           23323423-23323548,23324100-23325890
          Length = 1630

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 300 QSSITPNSRREHCDIHRKDC*TN-ALHQADVARAS--LGTIASISEQNSGTLHAIVPRAR 470
           +S++ P  RREH +   +DC  N A+H          +G I S+S   S   H ++P   
Sbjct: 300 KSNVQPCERREHIENGIRDCNVNEAVHTVTTEPGGHHIGAIKSLS--LSKMQHTVIP--- 354

Query: 471 DQDSHSSRDPL*RHKNSPT 527
           D D+H +     +H   PT
Sbjct: 355 DADNHVTGKQHVKHAAPPT 373


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 249 RSNMRWSVLWSRAGSKPQSSITPNSRREHC 338
           R  MRW ++W++   +    ITPN ++  C
Sbjct: 667 RLRMRWLMVWNKIAKRLNGQITPNLKKIIC 696


>11_01_0541 +
           4275660-4275766,4275856-4275973,4276160-4276386,
           4276505-4276729,4276902-4277052,4277139-4277345,
           4277442-4277520,4277605-4277723
          Length = 410

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 419 RCDSPKRCSCNVRLVESISSAVLTVDIAMLSSA 321
           RC S K+C   ++ V+S S  VL +D   LS++
Sbjct: 108 RCGSQKQCDYVIQYVDSSSMGVLVIDRFSLSAS 140


>01_01_0678 - 5209468-5209534,5209588-5209755,5212135-5212292
          Length = 130

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 499 LYDDIRTLLRSSSEHDVITDIVNTRHPKDLVTS 597
           +YDDI  +L  ++ HD    +VN  HP   V S
Sbjct: 59  VYDDINIVLHMTAVHDEEESLVNLVHPFSCVFS 91


>11_02_0040 - 7665220-7666656
          Length = 478

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = +2

Query: 554 PTSSTRGILKIWSPAQGSSSEIYFPVAYQNAL--RLDSK-------QFTPEYEACLKD 700
           PTS    +LK WSP +   + +  P A  + L  RLD+         F+PE  A LK+
Sbjct: 203 PTSRPPPLLKRWSPEEDDDATVVLPYADVSELIERLDTPPLRERMVHFSPESLAALKE 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,606,158
Number of Sequences: 37544
Number of extensions: 324324
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)