Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5963
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 30 1.9
AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical ... 30 1.9
Z98853-2|CAB57902.2| 371|Caenorhabditis elegans Hypothetical pr... 29 3.3
U61953-4|AAC48076.1| 326|Caenorhabditis elegans Hypothetical pr... 29 3.3
AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein. 28 7.5
AL032643-2|CAA21661.2| 404|Caenorhabditis elegans Hypothetical ... 28 7.5
AC006708-13|AAF60415.1| 788|Caenorhabditis elegans Metaphase-to... 28 7.5
U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical pr... 27 9.9
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 363 FSSPYGGYRNALFGCSA*CCSEVCFPPSTTALTT 262
FS+P + N+LFG S CS C PP +T TT
Sbjct: 12 FSAPASAFFNSLFGGSNCGCS--CTPPPSTCPTT 43
>AL117205-5|CAB55163.1| 456|Caenorhabditis elegans Hypothetical
protein Y116A8A.6 protein.
Length = 456
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Frame = +1
Query: 298 LRAALRRTAEESIAISTVRTAELMLSTRRTLQEHLLGLSHRSQNKTAVLFTQLYRGHATR 477
L+A+ + E + + RTA S++ +Q + +T+ L T T
Sbjct: 337 LQASSKPATEPLLQPESARTASSSASSKPEVQTTIPTEIQTPSLRTSSLKTSTTVTTTTV 396
Query: 478 THT---PLATLYDDIRTLLRSSSEHDVITDIVNTRHPKDLVTSARKFFRDLF 624
T T P Y D ++ E D IT+ N H DL+ +FF F
Sbjct: 397 TTTTPDPATVDYGDDHDMIGLVDEDDEITESNNRAHRMDLILGQFEFFLSSF 448
>Z98853-2|CAB57902.2| 371|Caenorhabditis elegans Hypothetical
protein R08A2.2 protein.
Length = 371
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 538 LSSIVGE-FLCRHRGSREECESWSRARGTIA*RVPLFCSE 422
L + VG+ LC H G + C SW + PL C E
Sbjct: 167 LCARVGQRILCMHGGISQNCNSWESFKALKKPNTPLTCDE 206
>U61953-4|AAC48076.1| 326|Caenorhabditis elegans Hypothetical
protein R08C7.8 protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 538 LSSIVGE-FLCRHRGSREECESWSRARGTIA*RVPLFCSE 422
L + VG+ LC H G + C SW + PL C E
Sbjct: 122 LCARVGQRILCMHGGISQNCNSWESFKALKKPNTPLTCDE 161
>AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein.
Length = 788
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 378 QADVARASLGTIASISEQNSGTLHAIVPRARDQDSHSSR-DPL*RHKNSPTIEL 536
++ V R++ GTIAS + + T I PR S SR +P K+S E+
Sbjct: 233 ESSVRRSTRGTIASANRETRNTTSNITPRQSTPGSTPSRINPTAPRKSSRISEM 286
>AL032643-2|CAA21661.2| 404|Caenorhabditis elegans Hypothetical
protein Y54E5A.3 protein.
Length = 404
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -2
Query: 400 DALATSAWWRALVQQSLRWISQCSLRLFGVMLL*GLLPALDHSTDHRIFDLVLGRHQ 230
D TSA WR +++ ++ L G + G L LD ST H DL+L + +
Sbjct: 286 DMRTTSAKWRIDLRKPKKYDKNRPCLLQGTVQRGGELLILDFSTWHMKIDLILAKER 342
>AC006708-13|AAF60415.1| 788|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 1,
isoform a protein.
Length = 788
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 378 QADVARASLGTIASISEQNSGTLHAIVPRARDQDSHSSR-DPL*RHKNSPTIEL 536
++ V R++ GTIAS + + T I PR S SR +P K+S E+
Sbjct: 233 ESSVRRSTRGTIASANRETRNTTSNITPRQSTPGSTPSRINPTAPRKSSRISEM 286
>U41552-9|AAC69098.2| 1061|Caenorhabditis elegans Hypothetical
protein K07E3.1 protein.
Length = 1061
Score = 27.5 bits (58), Expect = 9.9
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 1/139 (0%)
Frame = +2
Query: 215 DTIYQLVTTKNQVKYAVVSAVVEGGKQTSEQHYAEQPKRALRYPP*GLLN*CSPPGGRCK 394
DT Q Q Y V+ VV+ G T Q A+Q G+ + P +
Sbjct: 493 DTSDQGTAPVVQAAYKTVAEVVQQGLSTDSQS-AKQVS--------GIGHTRISPAEKSS 543
Query: 395 SISWDYRIDLRTKQRYSSRNCTAGT-RPGLTLLSRPSMTT*ELSYDRAQSMTS*PTSSTR 571
+ Y TK+ S N R + +PS++ ++ Y +++ +S +SS+
Sbjct: 544 GANATYSHRTTTKEHASHGNSNGDCYRRHMISPRKPSLSYAQMLYPKSEPFSSSSSSSSS 603
Query: 572 GILKIWSPAQGSSSEIYFP 628
+L + SP+ +S ++ P
Sbjct: 604 SVLLLASPSDKNSRQLKEP 622
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,715,088
Number of Sequences: 27780
Number of extensions: 261336
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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