Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5961
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   157   7e-40
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    29   0.58 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   5.4  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   7.2  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    25   7.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   9.5  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   9.5  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  157 bits (382), Expect = 7e-40
 Identities = 78/110 (70%), Positives = 92/110 (83%)
 Frame = -1

Query: 403 EKPQAEVSPIPRIRITFTSRNVRSLEKVCADLINGAKKQKLGVKGPVRMPTKILGITTRK 224
           +K Q   S + RIRIT TSRNVR+LEKVC+DL+N AK ++L VKGPVR+PTKIL ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 223 TPCGEGSKTWDRFQMGIPKRVIDLHSPFEIVKQIPSINIEPGVKV*VTIA 74
           TP GEGSKTW+ ++M I KR+IDLHSP EIVKQI SI+IEPGV+V VTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 469 VVYFGRNSTSNMAAAVVSGKNIEKPQAEVSPIPRIR-ITFTSRNVRS 332
           V +FG NS S + AA  S  ++       SP+PR R I F S  V S
Sbjct: 631 VNFFGFNSKSRVVAAKTSVTDVITMVIPSSPMPRFRAINFESITVES 677


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 281  GCKGPSPHANQDPGYHHP*NSLW*RFKDLGSFSDGNPQESD 159
            G K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 914  GTKTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 179 GNPQESDRPTLSL*NCETDPLN*HRARCKGLGDHRRRVGKAANKI 45
           G P +   P+  L NC+ +P+   +A    L +H   V K  N+I
Sbjct: 713 GYPLQQATPS-DLRNCDFEPVKKRKADWDHLSNHDNEVKKENNRI 756


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 339 TLREVKVILMRGIGETSAWGFSMFLPDTTA 428
           TL  V+ +L   +  +S W  S F PD TA
Sbjct: 175 TLELVRRLLHSPMPTSSMWNLSTFQPDVTA 204


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 229 RKTPCGEGSKTWDRFQM 179
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 421  VSGKNIEKPQAEVSPIPRIRITFTSRNVRSLEKVCADLINGAKKQKLGVK 272
            +S   IEKP+A  SPI        +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHHA----NNNGLRLLKDVLKKTYRGARENRSSVK 936


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,856
Number of Sequences: 5004
Number of extensions: 50705
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)