Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5961
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 151 5e-37
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 150 8e-37
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 146 1e-35
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 36 0.021
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 1.8
09_04_0375 - 17055024-17055956,17056045-17056296 28 5.5
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 28 5.5
02_01_0686 + 5112712-5112942 28 5.5
01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297 28 5.5
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 27 9.6
05_03_0165 - 9083591-9084844 27 9.6
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 151 bits (365), Expect = 5e-37
Identities = 73/121 (60%), Positives = 92/121 (76%)
Frame = -1
Query: 433 AAAVVSGKNIEKPQAEVSPIPRIRITFTSRNVRSLEKVCADLINGAKKQKLGVKGPVRMP 254
A + G + +A + RIRIT +S+NV++LEKVCADL+ GAK ++L VKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 253 TKILGITTRKTPCGEGSKTWDRFQMGIPKRVIDLHSPFEIVKQIPSINIEPGVKV*VTIA 74
TK+L ITTRK+PCGEG+ TWDRF+ I KRVIDL S ++VKQI SI IEPGV+V VTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 73 D 71
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 150 bits (363), Expect = 8e-37
Identities = 77/126 (61%), Positives = 95/126 (75%), Gaps = 4/126 (3%)
Frame = -1
Query: 436 MAAAVV----SGKNIEKPQAEVSPIPRIRITFTSRNVRSLEKVCADLINGAKKQKLGVKG 269
MAAA V G + +A + RIRIT +S+NV++LEKVCADL+ GAK ++L VKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 268 PVRMPTKILGITTRKTPCGEGSKTWDRFQMGIPKRVIDLHSPFEIVKQIPSINIEPGVKV 89
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ I KRVIDL S ++VKQI SI IEPGV+V
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 88 *VTIAD 71
VTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 146 bits (354), Expect = 1e-35
Identities = 68/100 (68%), Positives = 84/100 (84%)
Frame = -1
Query: 370 RIRITFTSRNVRSLEKVCADLINGAKKQKLGVKGPVRMPTKILGITTRKTPCGEGSKTWD 191
RIRIT +S++V++LEKVC DL+ GAK + L VKGPVRMPTK+L ITTRK+PCGEG+ TWD
Sbjct: 28 RIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWD 87
Query: 190 RFQMGIPKRVIDLHSPFEIVKQIPSINIEPGVKV*VTIAD 71
RF+M + KRVIDL S ++VKQI SI IEPGV+V VTI+D
Sbjct: 88 RFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 35.9 bits (79), Expect = 0.021
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = -1
Query: 385 VSPIPRIRITFTSRNVRSLEKVCADLINGAKKQKLGVKGPVRMPTKILGITTRKTPCGEG 206
++P +IRI S V +E C +I AK GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 205 SKTWDRFQMGIPKRVIDLHSP-FEIVKQIPSINIEPGVKV*VTI 77
+ F++ +R+ID+ P + + + + + GV V V +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 341 CALTRKGLC*PNQWSQETEAGCKGPSP 261
C L +GL ++W++ AG +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 256 PTKILGITTRKTPCGEGSK 200
PTK+ G+ PCG GSK
Sbjct: 326 PTKLFGVHLSAAPCGAGSK 344
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 403 EKPQAEVSPIPRIRITFTSRNVRSLEKVCADLINGAKKQKLGVKGPVRMPTK 248
E+ + E P+ I FT + ++ D+I +KK+ G K P R P K
Sbjct: 57 EESEMESVPLTAEAIAFTEKK---MDMTLDDIIKMSKKKNPGGKKPARQPIK 105
>02_01_0686 + 5112712-5112942
Length = 76
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 465 FISAGIQQA-TWQPL*CQAKTSRNPRQRFPLFPASGSLLLLAMCAHSKR 322
FI A + + W+ + K +RN R+R LFP L LA A +R
Sbjct: 6 FIGAALIEVWRWEERMVEKKRTRNTRERGGLFPRKLQLRALAAIARFRR 54
>01_06_1408 - 37088014-37088448,37088892-37089167,37090777-37092297
Length = 743
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 174 IPI*KRSQVFEPSPQGVLRVVIPRILVGMRTGPFTPSFCFLAPLIRSAQTFSSER 338
+P ++++FEP+P G +VV+ + T P+ P + L+ S+E+
Sbjct: 538 LPAELQAKIFEPAPAGARKVVLATNIADAET-PYNPRTAMESFLVAPVSRASAEQ 591
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 247 SWLA-CGLGPLHPASVSWLH 303
+WLA C +GPL P+ + W H
Sbjct: 172 AWLASCQIGPLFPSWLQWQH 191
>05_03_0165 - 9083591-9084844
Length = 417
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 234 VIPRILVGMRTGPFTPSFCFLAPLI 308
V+ R +G TGPF+P FL P I
Sbjct: 371 VLGRSQIGCSTGPFSPFTGFLTPCI 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,471
Number of Sequences: 37544
Number of extensions: 367108
Number of successful extensions: 862
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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