Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5961
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   153   8e-38
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    29   2.1  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    29   2.1  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    29   2.1  
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  153 bits (371), Expect = 8e-38
 Identities = 71/100 (71%), Positives = 86/100 (86%)
 Frame = -1

Query: 370 RIRITFTSRNVRSLEKVCADLINGAKKQKLGVKGPVRMPTKILGITTRKTPCGEGSKTWD 191
           RIR+T TS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+L ITTRKTPCGEGSKTWD
Sbjct: 18  RIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTWD 77

Query: 190 RFQMGIPKRVIDLHSPFEIVKQIPSINIEPGVKV*VTIAD 71
           RFQM I KR+I+LH+P E+++QI SI+IEPGV + VT AD
Sbjct: 78  RFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 458 RPEFNKQHGSRCSVRQKHRETPGRGFPYSPHQDHFYFSQCALTRKG 321
           RP  N+  G+R  +R+ ++ET G  F  S  +D       +  RKG
Sbjct: 349 RPSTNELSGARLLIRKAYKETAGSNFQISDIKDGVGSKLSSRGRKG 394


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 458 RPEFNKQHGSRCSVRQKHRETPGRGFPYSPHQDHFYFSQCALTRKG 321
           RP  N+  G+R  +R+ ++ET G  F  S  +D       +  RKG
Sbjct: 349 RPSTNELSGARLLIRKAYKETAGSNFQISDIKDGVGSKLSSRGRKG 394


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 346 RNVRSLEKVC-ADLINGAKKQKLGVKGPVRMPTKILGITTRKT 221
           R+ +S  KVC   L  GAKK++        +  KILGIT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 331 LEKVCADLINGAKKQKLGVKGPVRMPTKILGITTRKTPCGE 209
           +E V A  + G KK+    K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,383
Number of Sequences: 27780
Number of extensions: 297808
Number of successful extensions: 580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)