Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5961
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.49 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.86 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 388 LPGVSRCFCLTLQRLPCCLLNSGRNKQLFNQKLFTAEPEKPHVLVTFE 531
           +PG     C  ++ +PC   + GR   + N+ ++ ++P+K  VLV  E
Sbjct: 534 IPGTQEHVC-GVKGIPC---SWGRAINVANRYVYASQPDKDRVLVISE 577


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 305 QWSQETEAGCKGPSPHANQDP 243
           Q SQ+  +G  GP P  +Q P
Sbjct: 11  QQSQQPSSGAPGPQPSPHQSP 31


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 272 GPSPHANQDPGYHH 231
           G SPH +Q P  +H
Sbjct: 626 GSSPHFHQSPSQNH 639


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 317 C*PNQWSQETEAGC 276
           C P +W  E + GC
Sbjct: 488 CGPGKWPHEDKRGC 501


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 317 C*PNQWSQETEAGC 276
           C P +W  E + GC
Sbjct: 578 CGPGKWPHEDKRGC 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,984
Number of Sequences: 438
Number of extensions: 3956
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)