Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5960
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 42 7e-04
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 39 0.005
06_02_0086 - 11567390-11567634,11568316-11568341,11571082-115712... 31 0.71
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 30 2.2
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 29 3.8
04_04_1665 - 35164114-35164188,35164361-35164415,35164535-351648... 28 6.6
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 28 6.6
03_06_0046 - 31263294-31263610,31263873-31264026,31265514-312655... 28 8.8
>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 41.5 bits (93), Expect = 7e-04
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Frame = +2
Query: 11 KNLKWIGEPV-KADATKIYYEKVEIDGAELCNGDFVMIETSQTNIPTLVAKVVYMWKEIL 187
K +KW G+ K + ++ Y+ V + + G + T + T++ V YM+++ L
Sbjct: 1049 KEIKWEGQTAGKTVSGEVLYKCVIVQDLSISVG--ATVTTEDDSGETIMCFVEYMYEK-L 1105
Query: 188 NPKSGYFHGEVFIRASDTVLGEVSDPREVFLGDRC 292
+ K+ HG + S TVLG ++ REVFL + C
Sbjct: 1106 DGKN-MIHGIILQEGSQTVLGNAANDREVFLTNDC 1139
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = +2
Query: 11 KNLKWIGEPV-KADATKIYYEKVEIDGAELCNGDFVMIETSQTNIPTLVAKVVYMWKEIL 187
K ++W GE + K + + Y+ + + G V +E + ++ V YM++++
Sbjct: 705 KEIRWEGEAIGKTPSGEALYKCAYVRELRINLGRTVALEDDSGEL--VMCFVEYMFQKLN 762
Query: 188 NPKSGYFHGEVFIRASDTVLGEVSDPREVFLGDRC 292
K HG + + S+TVLG ++ R++FL + C
Sbjct: 763 GAKM--VHGRLLQKGSETVLGNAANERDLFLTNEC 795
>06_02_0086 -
11567390-11567634,11568316-11568341,11571082-11571224,
11571569-11571682,11571855-11572888,11574723-11575047,
11576843-11577124
Length = 722
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +2
Query: 23 WIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQTNIPTLVAKVVYMWKE 181
W+G+P++ K YY IDG D +++ + + +K+ +W+E
Sbjct: 502 WVGDPLRVVENKTYYYSCNIDGIAYNLDDHILVASKDKE--SAPSKLQSLWEE 552
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 179 EILNPKSG--YFHGEVFIRASDTVLGEVS---DPREVFLGDRCCHGAPLSSILRKANIER 343
E K+G YF + F A DTV+GE + DPR +F D L I+ K I +
Sbjct: 699 EFFETKTGECYFRVQWFFTAEDTVIGEQAQSHDPRRLFYSDLTDDNL-LDCIVSKVTIVQ 757
Query: 344 KEMSAD 361
S D
Sbjct: 758 VPPSVD 763
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 380 KEVDDEHFEDDGRTYFYSKYYDRFTSRFEDLPPDPAC 490
++ DD EDDG + R S E LP P C
Sbjct: 588 EDTDDSPMEDDGEANVVKCFESRIKSAVEALPNRPTC 624
>04_04_1665 -
35164114-35164188,35164361-35164415,35164535-35164844,
35165401-35165521,35165701-35165796,35166163-35166266,
35167368-35167485
Length = 292
Score = 28.3 bits (60), Expect = 6.6
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +2
Query: 596 EIVSEQNRSEWSYVKWQDFDYKKGCGVFLKPG 691
++ E +R WS++ W+ F ++ F + G
Sbjct: 172 DMFGENHRFTWSHISWESFSFRDSSSRFRRTG 203
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 389 DDEHFEDDGRTYFYSKYYDRFTSRFEDL 472
DDEH EDDG YS D FTS ++L
Sbjct: 524 DDEHSEDDG----YSPVDDEFTSARDEL 547
>03_06_0046 -
31263294-31263610,31263873-31264026,31265514-31265551,
31265941-31266631
Length = 399
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 312 ESGAPWQHLSPKNTSLGSLTS 250
++GAPW LSP S G L S
Sbjct: 67 DAGAPWNALSPTGISAGDLAS 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,119
Number of Sequences: 37544
Number of extensions: 349508
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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