Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5960
         (733 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089582-1|AAL90320.1|  304|Drosophila melanogaster RE11615p pro...    29   8.6  
AE014297-4808|AAF57197.2|  304|Drosophila melanogaster CG2126-PA...    29   8.6  

>AY089582-1|AAL90320.1|  304|Drosophila melanogaster RE11615p
           protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 54  QKYITKKLKLMVLSCVMVTLS*LKLPKQTFLHWSLKLYTCGKKSLTRNRAIFTEKS-SYE 230
           +K+  K+L L   + V V +S +         W L+LY C  + LT    +F   S +YE
Sbjct: 80  RKFSRKQLILTASAFVEVAISAILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYE 139

Query: 231 PQTQF*EK*VTQEKYFWVTDVAMVLRFL 314
            +        TQE  + +  + +V  FL
Sbjct: 140 ARVY-----CTQEAVYPLQTIVLVFYFL 162


>AE014297-4808|AAF57197.2|  304|Drosophila melanogaster CG2126-PA
           protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 54  QKYITKKLKLMVLSCVMVTLS*LKLPKQTFLHWSLKLYTCGKKSLTRNRAIFTEKS-SYE 230
           +K+  K+L L   + V V +S +         W L+LY C  + LT    +F   S +YE
Sbjct: 80  RKFSRKQLILTASAFVEVAISAILATLLMEPMWELRLYACDVRKLTDWYTLFYNPSPNYE 139

Query: 231 PQTQF*EK*VTQEKYFWVTDVAMVLRFL 314
            +        TQE  + +  + +V  FL
Sbjct: 140 ARVY-----CTQEAVYPLQTIVLVFYFL 162


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,450,484
Number of Sequences: 53049
Number of extensions: 623323
Number of successful extensions: 1770
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)