Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5960
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical ... 32 0.36
AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical ... 32 0.36
U80023-14|AAG24047.2| 334|Caenorhabditis elegans Serpentine rec... 29 2.6
Z69794-2|CAA93681.1| 786|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 29 4.5
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 29 4.5
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 29 4.5
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 29 4.5
AC006807-6|AAK84620.2| 230|Caenorhabditis elegans Hypothetical ... 28 7.8
>AF039040-2|AAO91670.1| 615|Caenorhabditis elegans Hypothetical
protein T22B11.4b protein.
Length = 615
Score = 32.3 bits (70), Expect = 0.36
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Frame = +2
Query: 38 VKADATKIYYEKVEIDGAELCNGDFVMIETSQTNIPTLVAKVVYMWKE-------ILNPK 196
+K + ++Y K ++ E C G+ +E++ T + T VA V+ E + +
Sbjct: 153 LKIENVTLHY-KFQVKAPEHCEGE---VESTPTGVHTCVASVLVDLSESKEDQPQVKDDD 208
Query: 197 SGYFHGEVFIRASDTVLGEVSDPREVFLGDRCCHGAPLSSILRKANIERKEMSADWFKLG 376
Y H + + + D + EV R+VF G + ++I R I+ G
Sbjct: 209 DEYDHSDNYDQYDDDLPPEVQFDRDVFSGAKELESYYTATIRRARQIKASASKDQQIYDG 268
Query: 377 GKEVDDEHFEDDGRTYFYS 433
++ EH + D + Y+
Sbjct: 269 ETIIESEHLKFDLKPEVYT 287
>AF039040-1|AAB94184.1| 553|Caenorhabditis elegans Hypothetical
protein T22B11.4a protein.
Length = 553
Score = 32.3 bits (70), Expect = 0.36
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Frame = +2
Query: 38 VKADATKIYYEKVEIDGAELCNGDFVMIETSQTNIPTLVAKVVYMWKE-------ILNPK 196
+K + ++Y K ++ E C G+ +E++ T + T VA V+ E + +
Sbjct: 153 LKIENVTLHY-KFQVKAPEHCEGE---VESTPTGVHTCVASVLVDLSESKEDQPQVKDDD 208
Query: 197 SGYFHGEVFIRASDTVLGEVSDPREVFLGDRCCHGAPLSSILRKANIERKEMSADWFKLG 376
Y H + + + D + EV R+VF G + ++I R I+ G
Sbjct: 209 DEYDHSDNYDQYDDDLPPEVQFDRDVFSGAKELESYYTATIRRARQIKASASKDQQIYDG 268
Query: 377 GKEVDDEHFEDDGRTYFYS 433
++ EH + D + Y+
Sbjct: 269 ETIIESEHLKFDLKPEVYT 287
>U80023-14|AAG24047.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein234 protein.
Length = 334
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -2
Query: 201 PDFGLRISFHMYTTLATSVGMFVWEVSIMTKSPLH 97
PDF L+++FH+ T LAT + F + I+ K+P+H
Sbjct: 12 PDF-LKMTFHVITGLATPIHAFGF-YCIVKKTPIH 44
>Z69794-2|CAA93681.1| 786|Caenorhabditis elegans Hypothetical
protein R03G8.4 protein.
Length = 786
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 47 DATKIYYEKVEIDGAELCNGDFVMIETSQTNIPTLVAKVVY 169
DA ++Y +K+EI+G +F T QT PT+ Y
Sbjct: 454 DALRVYSDKLEINGKPFDIEEFGRCWTHQTGYPTVYVSSYY 494
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical
protein F57C7.4 protein.
Length = 1484
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 107 DFVMIETS-QTNIPTLVAKVVYMWKEILNPKSGYFHGEVFIRASDTVLGEVSDPREVFL 280
D++ I+ +++PTL W+ + +P+ GYF+ FI T++ V +VF+
Sbjct: 634 DYIRIQALVSSSLPTLNIT----WEVVRDPQFGYFNISSFISNPTTIIKNVPSKSDVFV 688
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 2 SNSKNLKWIGEPVKADATKIYYEKVEIDGAELCNGDFVMIETSQ 133
SNS+ LK +G+ +K DAT + V+ AEL G ++ T Q
Sbjct: 2609 SNSRELKNVGDEIKIDATPEDAQAVDTKLAELQAGIDGLLATLQ 2652
>AC006807-6|AAK84620.2| 230|Caenorhabditis elegans Hypothetical
protein Y58A7A.6 protein.
Length = 230
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 395 EHFEDDGRTYFYSKYYDRFTSRFEDLPP 478
+H RT+F + Y+D FT FE PP
Sbjct: 185 QHLHLIDRTHFQTMYWDIFTDCFERNPP 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,492
Number of Sequences: 27780
Number of extensions: 340460
Number of successful extensions: 1115
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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