Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5958
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    28   1.6  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.3  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +1

Query: 508 SKYLK*HLSTSLRVFFFLQINLINITSFSIRRCSSSDVQSSQMIGYTRT 654
           S+Y K    T + +F F+  NL  + S   +  +++   ++++I   R+
Sbjct: 409 SRYFKVRYGTKIILFIFIAFNLFELCSIPFKHYAATSAAAARLIPLVRS 457


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 571  LINITSFSIRRCSSSDVQSSQMIGYTRTHLNLFISSFQEPHSWVQR 708
            ++N    S RR +  DV+S  +I Y  T  N  I S +    +VQR
Sbjct: 1160 ILNPRFRSKRRSTDHDVESLSLIPYEPTSPNEVIDSIRHSLGFVQR 1205


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 537 IFARFFFPTNKFN*HHILFHPSL*FIGCSIFSNDRLHPNTLKPVH 671
           +FA+    T   N +  +F   +  IGC IF+   L+ ++ KP H
Sbjct: 308 VFAKNPSKTPPCNDNFKIFSDDIKLIGCKIFAGVSLNFSSPKPAH 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,542
Number of Sequences: 5004
Number of extensions: 56603
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)