Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5955
         (458 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.69 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 251 ICYF--YVTSSEEFRASISPISAL 186
           ICY+  YVT  EEF+   SP+ ++
Sbjct: 485 ICYWVIYVTYQEEFKWQDSPLGSI 508


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 83  GFKIDSIVHLLVSSTLGL 30
           GF+ID++ HL  S+ + L
Sbjct: 226 GFRIDAVPHLFESANISL 243


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 237 IEITYLPPIHQI*ALKKTGIREIDEKMVEI 326
           +++ Y+P + Q+  L     ++ID K V++
Sbjct: 593 VQLWYVPSLDQVWILNWRNQKDIDVKTVQV 622


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 299 GDR*ENGGDTATICEGCNG 355
           GDR       A  CEGC G
Sbjct: 191 GDRASGYHYNALTCEGCKG 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,253
Number of Sequences: 438
Number of extensions: 2158
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)