Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5954
(331 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0133 - 12643343-12643552 29 1.2
09_02_0468 - 9608922-9610061 29 1.2
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 29 1.2
11_01_0481 - 3702399-3703062,3703254-3703813 28 1.5
11_01_0333 + 2490132-2491007 27 3.6
08_02_0582 + 18993816-18993890,18994050-18994446,18995645-189957... 27 3.6
02_01_0375 + 2712289-2712957 27 3.6
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 4.7
04_04_0505 + 25719959-25720052,25721548-25722266 27 4.7
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 26 6.2
07_03_1473 + 26756338-26757583,26759067-26759472,26760867-267609... 26 6.2
06_03_1304 - 29187930-29188273,29188926-29189039,29189453-291897... 26 6.2
03_01_0545 - 4086692-4087591 26 6.2
02_02_0457 + 10503801-10507358 26 6.2
02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752 26 6.2
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234 26 6.2
01_01_0114 - 851249-852372,852577-852740,852838-853568 26 6.2
08_02_1357 - 26359701-26359804,26360749-26360852,26360967-26361379 26 8.3
06_01_0499 - 3581145-3582425 26 8.3
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 26 8.3
>09_03_0133 - 12643343-12643552
Length = 69
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +2
Query: 170 DGSP*KTRGRSSLPTGWG*LCSPSEAGGCSQRLSCTLCLKSKRTLKIC 313
D SP + GR L W C +EA GC CT T +C
Sbjct: 21 DASPAEQHGRRLLGDCWVWDCPSAEADGCCTMSGCTSTCVDGVTACVC 68
>09_02_0468 - 9608922-9610061
Length = 379
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = -2
Query: 312 QIFNVLLDFRHNVHESR*EQPPASEGEQSHPHPVGRLERPRVFYGEPSKLSRDDL 148
Q F L +R NV S +QP S G P P +RP P++ +D+
Sbjct: 6 QPFRFWLPYRSNVASSSRQQPRPSSGTAPAPPPPTPADRPPRASPAPARAMGEDI 60
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 135 WSNTSDHREKVSMALRRRRGDVQVYQPGGDDSALLRRRGAALNDFHARYA*SPRE 299
W + +R + A +RRG+ + G D + LRRRG A H A RE
Sbjct: 601 WRALAANRRR-GEAANQRRGEAATQRGGSDPAGGLRRRGEAAKRRHGEAANRWRE 654
>11_01_0481 - 3702399-3703062,3703254-3703813
Length = 407
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 180 RRRRGDVQVYQPGGDDSALLRRR 248
RRRR D +V+Q D + LLRRR
Sbjct: 69 RRRRQDPKVHQLDADSTGLLRRR 91
>11_01_0333 + 2490132-2491007
Length = 291
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 245 AGGCSQRLSCTLCLKSKRTLKICKRG 322
+GG + + S + CLKS +L +C G
Sbjct: 118 SGGATVKRSASFCLKSSTSLLLCTEG 143
>08_02_0582 + 18993816-18993890,18994050-18994446,18995645-18995748,
18995863-18996004,18996118-18996237,18996341-18996465,
18996903-18997061,18997161-18997323,18997420-18997545,
18997628-18997711,18997761-18998173,18998199-18998273,
18998463-18998663,18998862-18998971,18999072-18999156,
18999365-18999493,18999596-18999701,18999825-18999913,
19000064-19000366
Length = 1001
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 138 SNTSDHREKVSMALRRR-RGDVQVYQPGGDDSALLRRRGAALN 263
+ + H E V A+ RR G +VY GG + RRGA L+
Sbjct: 915 TTAAGHEEAVERAVARRCPGAAKVYGVGGTQRFEVPRRGARLD 957
>02_01_0375 + 2712289-2712957
Length = 222
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = +2
Query: 29 TKWLTDTAMTTMTIQMVLYW---PKAFPWWCSS 118
T W ++T M ++ V+YW KA WW S
Sbjct: 148 TNWESETFMKPDHVKYVVYWGRLSKALVWWKQS 180
>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 26.6 bits (56), Expect = 4.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -1
Query: 133 ISWRHRRAPPWKCLWPI 83
+SW+H + PW +W +
Sbjct: 1245 LSWKHNKCYPWNWVWQV 1261
>04_04_0505 + 25719959-25720052,25721548-25722266
Length = 270
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 203 SLPTGWG*LCSPSEAGGCSQRLSCT 277
SL GW C+PS GG + + CT
Sbjct: 229 SLNYGWYVRCTPSLVGGAASPIPCT 253
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 96 AFGQYNTICIVIVVMAVSVSHFVCLS 19
+ G YNTIC +I + A +SH LS
Sbjct: 312 SMGNYNTICSIIELGARLISHAGSLS 337
>07_03_1473 +
26756338-26757583,26759067-26759472,26760867-26760930,
26760975-26761055,26763350-26763588,26763689-26763947,
26764359-26764538,26764937-26765092,26765174-26765350
Length = 935
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 55 DHDDDTDGIVLAKGISMVVLFCASMICGLIPQIIARKFRWLSVEDAGTFKS 207
DH DD + KG+S++ LF + + LI ++A + + + GT KS
Sbjct: 769 DHHDDIASYLNKKGVSVIFLFRRNTLRRLI-SVLANDYDRDAKQLNGTHKS 818
>06_03_1304 -
29187930-29188273,29188926-29189039,29189453-29189722,
29190098-29190234,29190483-29191159
Length = 513
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 58 HDDDTDGIVLAKGISMVVLFCASMICGLIPQIIARK 165
H D DG++ KG + VL A + L PQI+++K
Sbjct: 341 HHHDFDGLIPFKGNTPKVLNQACFMDKLEPQIVSQK 376
>03_01_0545 - 4086692-4087591
Length = 299
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 145 VLDHISWRHRRAPPWKCLWPIQYH 74
V+ S R+ PPW C P+Q H
Sbjct: 84 VVGRASSSARQRPPWTCTSPLQRH 107
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 111 ALLCLHDMWSNTSDHR 158
A+ C+H WSNT D +
Sbjct: 26 AMSCVHSRWSNTQDQK 41
>02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752
Length = 248
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 23 KQTKWLTDTAMTTMTIQMVLYWPKAFPWW 109
++ KWL D T + V++ PWW
Sbjct: 123 RRRKWLEDCPEATSPDEAVVFDTSIIPWW 151
>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
Length = 487
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -2
Query: 282 HNVHESR*EQPPASEGEQSHPHPVGRLERPRV-FYGEP--SKLSRDD 151
H++H + + PP + HPHP+ +RP + G P K RDD
Sbjct: 366 HDLHHIQWDTPP-----RQHPHPLALADRPAMERSGAPFARKFPRDD 407
>01_01_0114 - 851249-852372,852577-852740,852838-853568
Length = 672
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 151 SEVLDHISWRHRRAPPWKC 95
S VLDH+ RH + P + C
Sbjct: 24 SLVLDHVEGRHHKCPSFSC 42
>08_02_1357 - 26359701-26359804,26360749-26360852,26360967-26361379
Length = 206
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 135 WS-NTSDHREKVSMALRRRR-----GDVQVYQPGGDDSALLRRRGAALND 266
W+ +++ + +V++A R+RR GD++VY G +D+ L G D
Sbjct: 63 WTCHSTTNSTEVALAARQRRWVARGGDLRVYDAGEEDAIFLAPAGMTHGD 112
>06_01_0499 - 3581145-3582425
Length = 426
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 150 DHREKVSMALRRRRGDVQVYQPGGDDSA 233
DH + V +A RRRR VQV QP G +A
Sbjct: 3 DHDDDVPVAKRRRRLCVQV-QPAGAGAA 29
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 37 AYRHSHDHDDDTDGIVLAKGISMVVLFCASMICGLIP 147
AY +H H D T G+ A G L+C+ + L+P
Sbjct: 17 AYFLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,744,657
Number of Sequences: 37544
Number of extensions: 202353
Number of successful extensions: 691
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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