Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5954
(331 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical p... 30 0.45
AF025465-9|AAB71020.2| 136|Caenorhabditis elegans Hypothetical ... 27 4.2
Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical pr... 26 7.3
U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical pr... 26 7.3
AC006762-10|AAF60556.1| 301|Caenorhabditis elegans Hypothetical... 26 7.3
Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical p... 25 9.7
Z75554-3|CAA99955.2| 533|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 25 9.7
AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like p... 25 9.7
AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical ... 25 9.7
>U80447-10|AAB37814.1| 477|Caenorhabditis elegans Hypothetical
protein F55F8.9 protein.
Length = 477
Score = 29.9 bits (64), Expect = 0.45
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 85 LAKGISMVVLFCASMICGLIPQIIARKFRW--LSVEDAGTFKSTNRVXXXXXXXXXXXXX 258
+ K + M V+F ++I GL P + K R + + + K + V
Sbjct: 5 ILKLVLMFVMFSLTVIVGLSPLKVLHKLRHEAATAQSSSKHKHVSLVLCLLTCFSGGVFL 64
Query: 259 XXXXXHVMPEVQENIENL 312
H+ PE++EN+E L
Sbjct: 65 ATCFLHLFPELRENLETL 82
>AF025465-9|AAB71020.2| 136|Caenorhabditis elegans Hypothetical
protein K02E7.11 protein.
Length = 136
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 93 FGQYNTICIVIVVMAVSVSHFVCLSVGPV 7
FG++ CI+ + + V +S F L + PV
Sbjct: 8 FGKFKIRCIIFLTLQVLISLFFLLGLAPV 36
>Z49207-8|CAJ85773.1| 455|Caenorhabditis elegans Hypothetical
protein R07E3.5b protein.
Length = 455
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 94 GISMVVLFCASMICGLIPQIIARKF 168
GI++V++ ++ I GL+P RKF
Sbjct: 123 GIAIVLMIVSTSIIGLVPNAKVRKF 147
>Z49207-7|CAA89072.1| 512|Caenorhabditis elegans Hypothetical
protein R07E3.5a protein.
Length = 512
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 94 GISMVVLFCASMICGLIPQIIARKF 168
GI++V++ ++ I GL+P RKF
Sbjct: 180 GIAIVLMIVSTSIIGLVPNAKVRKF 204
>U46669-5|AAA85746.3| 493|Caenorhabditis elegans Hypothetical
protein C41G11.4a protein.
Length = 493
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 312 QIFNVLLDFRHNVHESR*EQPPAS 241
+++N LLD HN E+R + PAS
Sbjct: 399 RVWNFLLDLFHNGSEARRQSAPAS 422
>AC006762-10|AAF60556.1| 301|Caenorhabditis elegans Hypothetical
protein Y42G9A.1 protein.
Length = 301
Score = 25.8 bits (54), Expect = 7.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 306 FNVLLDFRHNVHESR*EQPPASEGEQSHPHPVGRLERPRVFYGEPSKLSRDDL 148
FN LL+ ++ HE + A E+S V ++PR P+ +RDDL
Sbjct: 233 FN-LLELGNSAHEVKRVLLKARRREESEESDVSFSKKPRPSSRSPASPNRDDL 284
>Z82274-11|CAB54268.2| 315|Caenorhabditis elegans Hypothetical
protein JC8.12a protein.
Length = 315
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 88 AKGISMVVLFCASMICGLIPQIIARKF 168
A G SM+V AS+ C L+ +I+ ++
Sbjct: 7 AAGRSMIVFVAASVFCSLMSKIMVTRY 33
>Z75554-3|CAA99955.2| 533|Caenorhabditis elegans Hypothetical
protein ZC455.4 protein.
Length = 533
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 108 GALLCLHDMWSNTSDHREKVSMALRRRRGDV 200
G + HD WS +H E + L R+ +V
Sbjct: 276 GGITVDHDYWSTNGNHSELLEHVLNARKHNV 306
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 85 IQYHLYRHRGHGCVCKPFCLFV 20
+Q+ +Y C+C P CLFV
Sbjct: 96 VQFEMYTSLHWLCLCIPVCLFV 117
>AF324487-1|AAK49908.1| 315|Caenorhabditis elegans JC8.12-like
protein protein.
Length = 315
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 88 AKGISMVVLFCASMICGLIPQIIARKF 168
A G SM+V AS+ C L+ +I+ ++
Sbjct: 7 AAGRSMIVFVAASVFCSLMSKIMVTRY 33
>AC006696-8|AAF39989.1| 120|Caenorhabditis elegans Hypothetical
protein W08E12.2 protein.
Length = 120
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 230 CSPSEAGGCSQRLSCTLCLKSKRTLKICKRGTFS 331
C+P GGC+ R C+ C + C FS
Sbjct: 67 CNPCNGGGCAPR--CSYCPNNFGYSSCCNSNNFS 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,844,444
Number of Sequences: 27780
Number of extensions: 151714
Number of successful extensions: 450
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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