Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5954
         (331 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   0.96 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   0.96 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   1.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   1.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   3.9  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   5.1  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   5.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   6.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   6.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   8.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    20   8.9  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    20   8.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    20   8.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.96
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 49  SHDHDDDTDGIVLAKGISM 105
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 0.96
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 49  SHDHDDDTDGIVLAKGISM 105
           SH   D  DGIVLA GI++
Sbjct: 280 SHRSIDVKDGIVLATGITV 298


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 46  VCKPFCLFVCWPGVV 2
           V KP C+ +C PG V
Sbjct: 58  VPKPLCIKICAPGCV 72


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 46  VCKPFCLFVCWPGVV 2
           V KP C+ +C PG V
Sbjct: 58  VPKPLCIKICAPGCV 72


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +1

Query: 4   PHRANRQTNKMAYRHSHDHDDDTDGI 81
           P+      N   Y+H  DH    DG+
Sbjct: 82  PYNRMDMRNATYYQHQQDHGSGMDGM 107


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -2

Query: 318 RLQIFNVLLDFRHNVHESR*EQPPASEGEQSHP 220
           RL++FN+     H++H    ++      E + P
Sbjct: 98  RLELFNITTTTIHSIHSIDGDEENGLTSESTDP 130


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 142 IPQIIARKFRWLSVEDAGTFKSTNRV 219
           +P +  RKF+ ++  +  TFK+  +V
Sbjct: 71  LPSLPDRKFQTVTSIEGNTFKTETQV 96


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 142 IPQIIARKFRWLSVEDAGTFKSTNRV 219
           +P +  RKF+ ++  +  TFK+  +V
Sbjct: 73  LPSLPDRKFQTVTSIEGNTFKTETQV 98


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 132 MWSNTSDHREKVSMALRRRRGDV 200
           +W N  DH   +SM +    G V
Sbjct: 219 VWCNEEDHLRIISMQMGGDLGQV 241


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 22  QTNKMAYRHSHDHDDDTDGIVLAKGISM 105
           Q ++  Y  SH HD   D   +A+ +SM
Sbjct: 696 QVDEREYPESHGHDSGQDE-DMAEDLSM 722


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 14  PTDKQTKWLTDTAMTTMTIQMVLYW 88
           P D Q   L   + T   + MVLYW
Sbjct: 150 PFDVQECPLIFESWTHNVLDMVLYW 174


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 263 RLSCTLCLKSKRTL 304
           RL+C  C KS+  L
Sbjct: 372 RLTCRKCFKSRTNL 385


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 90  QRHFHGGALLCLHDMWSNTS 149
           Q   +  ALLCLH ++ N +
Sbjct: 7   QAFIYSLALLCLHAIFVNAA 26


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 90  QRHFHGGALLCLHDMWSNTS 149
           Q   +  ALLCLH ++ N +
Sbjct: 7   QAFIYSLALLCLHAIFVNAA 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,081
Number of Sequences: 438
Number of extensions: 1773
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)