Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5953
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582...    30   1.2  
01_03_0138 + 12963464-12965059,12965085-12965660                       28   5.0  
04_04_1114 + 30995816-30996229,30997054-30997129,30997493-309975...    27   8.8  
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973...    27   8.8  
01_06_1749 - 39636951-39638102                                         27   8.8  
01_02_0045 - 10576475-10577198,10578347-10578504                       27   8.8  

>04_03_0052 +
           10257109-10257337,10257580-10257668,10257708-10258289,
           10258477-10258668,10259392-10259563,10260190-10260461,
           10260682-10260801,10260912-10260968,10261631-10261831,
           10262451-10262511,10262712-10263013
          Length = 758

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 354 PSNRNALLLHGRNSQGSGTYPRGLIRGPTTSSAMSPGL*ADALRVPTR-RRGSSLGNSLL 178
           P  R   +  G N+  +G  P+G   GP   S   PG     L++  R RRG  L  ++ 
Sbjct: 55  PETREEAMYMGNNNN-NGFRPQGAALGPANESGRIPGQPNPLLKMLRRSRRGEELATTVT 113

Query: 177 IIICHL 160
           +   HL
Sbjct: 114 LRKHHL 119


>01_03_0138 + 12963464-12965059,12965085-12965660
          Length = 723

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 224 VCQRVEEVPH*ETPY*SLSVTCHLHLYCLYIM 129
           V  R+ E+ H  T   +  V CHL  YC Y++
Sbjct: 547 VATRLFEITHARTSPDNKIVACHLSYYCAYLV 578


>04_04_1114 +
           30995816-30996229,30997054-30997129,30997493-30997587,
           30997729-30997812,30998094-30998181,30998485-30998609,
           30998687-30998785,31000089-31000190,31001570-31001680
          Length = 397

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 342 FGLKGGAAVVAILETLELISRW----VAHLCYRCLWASATT*HPVGCELVHPS 488
           FGLK G  + +IL +L L +RW       L  +CL       +   C+  HPS
Sbjct: 302 FGLKTGGRIESILVSLPLTARWQYDHALILSSQCLTGWRQISNFSDCKWPHPS 354


>03_02_0599 -
           9730204-9730314,9730766-9731549,9731631-9732051,
           9732139-9732385,9733730-9733921,9734071-9734204,
           9734316-9734477,9736162-9736200,9737507-9737825
          Length = 802

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 17  GRDKVDRGLSTGTRLGKP 70
           G+DKVD G++ G  +G P
Sbjct: 610 GKDKVDEGIANGVNVGHP 627


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 382 SSIATTAAPPFKPKCITA 329
           SS+A+ AAPPF P  IT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>01_02_0045 - 10576475-10577198,10578347-10578504
          Length = 293

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -1

Query: 369 QRLPHPSNRNALLLHGRNSQGSGTYPRGLIRGPTTSSAMSPGL*ADALRVPTRRRGS 199
           QR    +   ++L+HGR S G+G+   G  RG  + +    G    A    + R+G+
Sbjct: 61  QRCGEGAAAASVLVHGRGSGGAGSPTLGARRGSNSGARAGEGAALGASGAGSGRQGA 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,508
Number of Sequences: 37544
Number of extensions: 292489
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)