Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5953
         (510 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 119 SIDVTDFCQRIS*GIWVVFPVEFLYLVPCQPYLFPLVPN 3
           SI+  D   +I   ++V+F   F  L+ C   L+P++ N
Sbjct: 6   SIEADDLLMKIPDFLYVIFMFLFAILMLCYDKLYPIIKN 44


>U88173-7|AAK21383.2|  361|Caenorhabditis elegans Hypothetical
           protein F46F11.6 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 372 LQRLPHPSNRNALLLHGRNSQGSGTYPRGL 283
           L RLP P  +N +L+   NSQ   T P  L
Sbjct: 28  LTRLPFPDKQNMMLVSWENSQICSTLPNKL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,389
Number of Sequences: 27780
Number of extensions: 232591
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)