Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5951
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    28   1.6  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    27   2.8  

>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 408 GKYLVLKGVAKLNLFFSRWIWVMAV*ILYHQFENP 304
           GK+   K    +++    W+W MA+ +L+  ++NP
Sbjct: 441 GKFYCGKFSKPISIVAVAWLWFMALMLLFPSYQNP 475


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 102 LMEIQDKSKQRIRAIEPEKQK 164
           LME + K K+RIR IE +K K
Sbjct: 141 LMEKEKKEKERIRLIEEQKHK 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,264
Number of Sequences: 5004
Number of extensions: 43113
Number of successful extensions: 69
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)