Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5949
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    85   1e-17
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    28   0.99 
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   3.0  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   3.0  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   4.0  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   4.0  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    26   4.0  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   5.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   5.3  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   5.3  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   7.0  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   9.2  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   9.2  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 60/156 (38%), Positives = 85/156 (54%), Gaps = 13/156 (8%)
 Frame = +3

Query: 150 RRKSVFAETYDPEEDDSDEGAPAVFPKSDAQ-IARLAEAVRGILLFRSLDAQQMQQVLDA 326
           RR+SV  E+ +P     +      FP  D + + RL  +V G  LF++LD +   +VL+A
Sbjct: 101 RRQSVSTESMNPSAFALE--TKRTFPPKDPEDLKRLKRSVAGNFLFKNLDEEHYNEVLNA 158

Query: 327 MFEKR-SEPGEYVIRQGDDGDNFYVIENGVFDVL------VTGDDRVE----KVVHTYEG 473
           M EKR  E G  VI QG  GD FY++E G FDV       +T ++ +       + T   
Sbjct: 159 MTEKRIGEAGVAVIVQGAVGDYFYIVEQGEFDVYKRPELNITPEEVLSSGYGNYITTISP 218

Query: 474 SGSFGELALMYNMPWAASVRAQTA-GALWAMDRHTF 578
              FGELALMYN P AASV ++T    ++A+DR +F
Sbjct: 219 GEYFGELALMYNAPRAASVVSKTPNNVIYALDRTSF 254



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 42/120 (35%), Positives = 62/120 (51%)
 Frame = +3

Query: 219 VFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYV 398
           VF  +  Q       +  + +  SLD  Q Q++ DA+     + G  VIRQGD G+ FY+
Sbjct: 258 VFENAYRQRMLYESLLEEVPILSSLDKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYL 317

Query: 399 IENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTF 578
           IE+G  +V+  G    + VV T      FGELAL++     A+V+A+T   L   D+ TF
Sbjct: 318 IEDGEAEVVKNG----KGVVVTLTKGDYFGELALIHETVRNATVQAKTRLKLATFDKPTF 373



 Score = 31.1 bits (67), Expect = 0.14
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +1

Query: 571 TRFRRILLKSAFKKRKLYEELLD 639
           T FRRI+ ++A+++R LYE LL+
Sbjct: 252 TSFRRIVFENAYRQRMLYESLLE 274


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 530 TGPDRRRSVGHGPSHVSVASCSRAHSRNASCTRSSS 637
           TGP RRR V  G S  S+   S A++ N S T +++
Sbjct: 135 TGPSRRRQVSSGSSTPSMTK-SSANNNNVSSTANTA 169


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 469 SYVWTTFSTRSSPV---TRTSKTPFSMT*KLSPSSPCLITYSPGSDLFSNIASRTCCICC 299
           SY  T  ST  +P    TRTS + F  +   +PSS    + S  S   S  +S +     
Sbjct: 122 SYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSS 181

Query: 298 ASRERNSSMPRTASARRAICASDLGNTAGAP 206
           +S    SS   ++S++ +  +S    ++ +P
Sbjct: 182 SSSSSKSSSSSSSSSKSSSSSSSSSKSSASP 212


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 445 TRSSPVTRT--SKTPFSMT*KLSPSSPCLITYSPGSDLFSNIASRT 314
           T+ +P + T     P     K+SP++P L T +   D+FS+ A  T
Sbjct: 416 TQGAPPSHTYGPPPPVQPKPKISPTTPRLSTLALADDMFSSTAKET 461


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 444 VEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAM 563
           ++  +HTY+G  S  +  L+ ++P ++   + TA  L +M
Sbjct: 267 IDSFIHTYDGFSSMTQCLLIISLPLSSLWASSTALKLQSM 306


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 439 SSPVTRTSKTPFSMT*KLSPS---SPCLITYSPGSDLFSNIASRTCCICCASRERNSSMP 269
           SSP+ R   TP S    ++PS    P     S G+   +++A+ +  +  +  ERN SM 
Sbjct: 459 SSPIMRADSTPISHNLAVTPSFSPIPQQSNKSIGNHKNTSVANVSSKVANSKFERNISMM 518

Query: 268 RTASA 254
             ++A
Sbjct: 519 SNSNA 523


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 399 IENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMY--NMPWAASVRAQTAGALW 557
           ++   F +L TGD  + K+   ++G G+  EL L Y   +P A  +     G L+
Sbjct: 313 MKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILKTGFLF 367


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +3

Query: 213 PAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNF 392
           PA F  +  Q  + A  + G+ + R ++      +   + +  +E  ++++     G  F
Sbjct: 178 PAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDTE--KHIVVYDLGGGTF 235

Query: 393 YV----IENGVFDVLVTGDD 440
            V    I+NGVF+VL T  D
Sbjct: 236 DVSLLSIDNGVFEVLATSGD 255


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = -2

Query: 425 QDVENAVLD-DVEVVAVIALSDYVLAGLGSLFEHRIQNLLHLLRVKRTEQQYAPDRLSET 249
           QD++++VLD +V+   +   SD  LA +G+ F+  ++ ++ LL+   + Q       S  
Sbjct: 689 QDLQSSVLDRNVKPAILSCFSDIALA-IGAAFQTYLEAVMVLLQQASSVQAPPGANFSMI 747

Query: 248 GYL-CVRLG 225
            Y+  +RLG
Sbjct: 748 DYVDALRLG 756


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 168 AETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSE 347
           AE+   EE +SD+ +    PK  ++  +    V+  + F S +++ +    DA FE   E
Sbjct: 111 AESVTSEESESDDSSYGGTPKKRSRQKKSNTYVQDEIRFSSRNSKGVNYNEDAYFESFEE 170

Query: 348 PGE 356
             E
Sbjct: 171 EEE 173


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = -2

Query: 437 VSGDQDVENAVLDDVEVVAVIALSDYVLAGLGSLFEHRIQNL-LHLLRVKRTEQQYAPDR 261
           +  D+D+ + V DDV+ V +I      +A LG      +Q+L L   ++K+ E    P+ 
Sbjct: 26  IDADEDLLDDVPDDVDCVELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIES--VPET 83

Query: 260 LSE 252
           L+E
Sbjct: 84  LTE 86


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 958

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/73 (24%), Positives = 30/73 (41%)
 Frame = +3

Query: 351  GEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPWAASV 530
            G+ + R+GD      ++E G+       D   E +          GEL       + A+V
Sbjct: 844  GDLLWRKGDTPSKLVILETGMVKASYQMDR--ESLSENITCLCVVGELPFFSKTCYNATV 901

Query: 531  RAQTAGALWAMDR 569
             A+   A+W +DR
Sbjct: 902  VAELDSAVWILDR 914


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 294 DAQQMQQVLDAM-FEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTG 434
           + Q+  + L+AM FE   +PG    +   D  NF VI+N   D+ +TG
Sbjct: 340 ECQRRLKELEAMHFE---QPGSVTEKLFPDPTNFEVIDNVSIDLTLTG 384


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +3

Query: 180 DPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDA 326
           D ++DD ++  PAV  +S     R+++    +   RS  ++Q+    D+
Sbjct: 426 DDDDDDPNDFRPAVERQSSTMNTRMSQPSSAVNTNRSYGSEQIPSYADS 474


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 362 YVLAGLGSLFEHRIQNLLHL 303
           +VL G+G   +H I NL HL
Sbjct: 450 FVLCGMGGRVDHAIGNLNHL 469


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -2

Query: 272 APDRLSETGYLCVRLGE---HGRGSFVRIILFGVISLGENGFAPIVKARHWRLFYKI 111
           A + L ET  L ++L +   HGR  +  I+L+G    G++  A  V       F+ I
Sbjct: 137 AKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSI 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,549
Number of Sequences: 5004
Number of extensions: 58024
Number of successful extensions: 211
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)