Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5949
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase ... 109 2e-24
U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase ... 109 2e-24
U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase ... 109 2e-24
J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein ( C.ele... 106 1e-23
U42438-4|AAM75371.1| 617|Caenorhabditis elegans Hypothetical pr... 75 3e-14
U42438-5|AAM75369.1| 581|Caenorhabditis elegans Hypothetical pr... 69 4e-12
AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying de... 62 3e-10
AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying de... 62 3e-10
AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying de... 62 3e-10
AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 62 3e-10
AF067612-6|AAU05568.1| 470|Caenorhabditis elegans Egg laying de... 52 3e-07
Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical pr... 46 3e-05
D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic nucleoti... 46 3e-05
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 41 9e-04
Z81061-5|CAB02935.4| 695|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 38 0.005
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 38 0.005
AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical... 30 1.2
AC024753-9|AAF60460.1| 139|Caenorhabditis elegans Hypothetical ... 30 1.2
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF067612-5|AAM98011.3| 195|Caenorhabditis elegans Egg laying de... 29 2.1
AF039045-2|AAO38660.2| 217|Caenorhabditis elegans Hypothetical ... 29 2.1
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 29 2.8
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 29 2.8
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 29 2.8
Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z75526-3|CAA99769.1| 578|Caenorhabditis elegans Hypothetical pr... 28 6.5
U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related... 28 6.5
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr... 27 8.6
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 27 8.6
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 27 8.6
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 27 8.6
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 27 8.6
AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog ... 27 8.6
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 27 8.6
>U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase
protein 2, isoform b protein.
Length = 334
Score = 109 bits (261), Expect = 2e-24
Identities = 64/150 (42%), Positives = 82/150 (54%)
Frame = +3
Query: 129 PVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQM 308
P R RR + AE P ++D E V PK DA L A+R LLF L+ +
Sbjct: 43 PPKRSGGRRTGISAE---PIKEDDTEYKKVVIPKDDATRRSLESAMRKNLLFAHLEEDEQ 99
Query: 309 QQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFG 488
+ + DAMF GE +I QG++GDNFYVI+ G DV V + V T GSFG
Sbjct: 100 KTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTVDVYVN-----HEYVLTINEGGSFG 154
Query: 489 ELALMYNMPWAASVRAQTAGALWAMDRHTF 578
ELAL+Y P AA+V A+T LWA+DR T+
Sbjct: 155 ELALIYGTPRAATVIAKTDVKLWAIDRLTY 184
Score = 58.8 bits (136), Expect = 3e-09
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +3
Query: 258 EAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL-VTG 434
E + + + LD + V DA+ EPG +V+ QG GD F++I G +VL
Sbjct: 201 EFLSKVQILADLDQWERANVADALERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKRS 260
Query: 435 DDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTF 578
DD VV S FGE+AL+ + P AA+V A+T +DR+ F
Sbjct: 261 DDAPFDVVGHLGMSDYFGEIALLLDRPRAATVVAKTHLKCIKLDRNRF 308
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 562 WTVTR--FRRILLKSAFKKRKLYEELL 636
W + R +RRIL+ S KKRK+Y+E L
Sbjct: 177 WAIDRLTYRRILMGSVTKKRKMYDEFL 203
>U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase
protein 2, isoform a protein.
Length = 366
Score = 109 bits (261), Expect = 2e-24
Identities = 64/150 (42%), Positives = 82/150 (54%)
Frame = +3
Query: 129 PVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQM 308
P R RR + AE P ++D E V PK DA L A+R LLF L+ +
Sbjct: 75 PPKRSGGRRTGISAE---PIKEDDTEYKKVVIPKDDATRRSLESAMRKNLLFAHLEEDEQ 131
Query: 309 QQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFG 488
+ + DAMF GE +I QG++GDNFYVI+ G DV V + V T GSFG
Sbjct: 132 KTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTVDVYVN-----HEYVLTINEGGSFG 186
Query: 489 ELALMYNMPWAASVRAQTAGALWAMDRHTF 578
ELAL+Y P AA+V A+T LWA+DR T+
Sbjct: 187 ELALIYGTPRAATVIAKTDVKLWAIDRLTY 216
Score = 58.8 bits (136), Expect = 3e-09
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +3
Query: 258 EAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL-VTG 434
E + + + LD + V DA+ EPG +V+ QG GD F++I G +VL
Sbjct: 233 EFLSKVQILADLDQWERANVADALERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKRS 292
Query: 435 DDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTF 578
DD VV S FGE+AL+ + P AA+V A+T +DR+ F
Sbjct: 293 DDAPFDVVGHLGMSDYFGEIALLLDRPRAATVVAKTHLKCIKLDRNRF 340
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 562 WTVTR--FRRILLKSAFKKRKLYEELL 636
W + R +RRIL+ S KKRK+Y+E L
Sbjct: 209 WAIDRLTYRRILMGSVTKKRKMYDEFL 235
>U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase
protein 2, isoform c protein.
Length = 376
Score = 109 bits (261), Expect = 2e-24
Identities = 64/150 (42%), Positives = 82/150 (54%)
Frame = +3
Query: 129 PVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQM 308
P R RR + AE P ++D E V PK DA L A+R LLF L+ +
Sbjct: 85 PPKRSGGRRTGISAE---PIKEDDTEYKKVVIPKDDATRRSLESAMRKNLLFAHLEEDEQ 141
Query: 309 QQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFG 488
+ + DAMF GE +I QG++GDNFYVI+ G DV V + V T GSFG
Sbjct: 142 KTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTVDVYVN-----HEYVLTINEGGSFG 196
Query: 489 ELALMYNMPWAASVRAQTAGALWAMDRHTF 578
ELAL+Y P AA+V A+T LWA+DR T+
Sbjct: 197 ELALIYGTPRAATVIAKTDVKLWAIDRLTY 226
Score = 58.8 bits (136), Expect = 3e-09
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +3
Query: 258 EAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL-VTG 434
E + + + LD + V DA+ EPG +V+ QG GD F++I G +VL
Sbjct: 243 EFLSKVQILADLDQWERANVADALERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKRS 302
Query: 435 DDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTF 578
DD VV S FGE+AL+ + P AA+V A+T +DR+ F
Sbjct: 303 DDAPFDVVGHLGMSDYFGEIALLLDRPRAATVVAKTHLKCIKLDRNRF 350
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 562 WTVTR--FRRILLKSAFKKRKLYEELL 636
W + R +RRIL+ S KKRK+Y+E L
Sbjct: 219 WAIDRLTYRRILMGSVTKKRKMYDEFL 245
>J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein (
C.elegans cAMP-dependentprotein kinase subunit R mRNA,
complete cds. ).
Length = 376
Score = 106 bits (255), Expect = 1e-23
Identities = 63/150 (42%), Positives = 81/150 (54%)
Frame = +3
Query: 129 PVARFNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQM 308
P R RR + AE P ++D E V PK DA L A+R LLF L+ +
Sbjct: 85 PPKRSGGRRTGISAE---PIKEDDTEYKKVVIPKDDATRRSLESAMRKNLLFAHLEEDEQ 141
Query: 309 QQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFG 488
+ + DAMF GE +I QG++GDNFYVI+ G DV V + V T GSFG
Sbjct: 142 KTMYDAMFPVEKSAGETIIEQGEEGDNFYVIDKGTVDVYVN-----HEYVLTINEGGSFG 196
Query: 489 ELALMYNMPWAASVRAQTAGALWAMDRHTF 578
ELAL+Y P AA+V A+ LWA+DR T+
Sbjct: 197 ELALIYGTPRAATVIAKIDVKLWAIDRLTY 226
Score = 58.4 bits (135), Expect = 4e-09
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Frame = +3
Query: 258 EAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL-VTG 434
E + + + LD + V DA+ EPG +V+ QG GD F++I G +VL
Sbjct: 243 EFLSKVQILADLDQWERVNVADALERCDFEPGTHVVEQGQPGDEFFIILEGEANVLQKRS 302
Query: 435 DDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTF 578
DD VV S FGE+AL+ + P AA+V A+T +DR+ F
Sbjct: 303 DDAPFDVVGHLGMSDYFGEIALLLDRPRAATVVAKTHLKCIKLDRNRF 350
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +1
Query: 562 WTVTR--FRRILLKSAFKKRKLYEELL 636
W + R +RRIL+ S KKRK+Y+E L
Sbjct: 219 WAIDRLTYRRILMGSVTKKRKMYDEFL 245
>U42438-4|AAM75371.1| 617|Caenorhabditis elegans Hypothetical
protein C09G4.2c protein.
Length = 617
Score = 75.4 bits (177), Expect = 3e-14
Identities = 46/136 (33%), Positives = 73/136 (53%)
Frame = +3
Query: 219 VFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYV 398
+ KSDA + A+R R+LDA Q++++ AM+ G +IRQGD G YV
Sbjct: 52 IIGKSDAAFETIGNALRLNSFLRNLDATQIEKISSAMYPVEVPAGAIIIRQGDLGSIMYV 111
Query: 399 IENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTF 578
I+ G V V D+R V T E FGELA++++ A+VRA + LWA++R+ F
Sbjct: 112 IQEG--KVQVVKDNR---FVRTMEDGALFGELAILHHCERTATVRAIESCHLWAIERNVF 166
Query: 579 PSHPAQERIQETQAVR 626
+ + ++T + +
Sbjct: 167 HAIMMESAREKTMSFK 182
>U42438-5|AAM75369.1| 581|Caenorhabditis elegans Hypothetical
protein C09G4.2a protein.
Length = 581
Score = 68.5 bits (160), Expect = 4e-12
Identities = 42/125 (33%), Positives = 68/125 (54%)
Frame = +3
Query: 252 LAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVT 431
+ A+R R+LDA Q++++ AM+ G +IRQGD G YVI+ G V V
Sbjct: 27 IGNALRLNSFLRNLDATQIEKISSAMYPVEVPAGAIIIRQGDLGSIMYVIQEG--KVQVV 84
Query: 432 GDDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALWAMDRHTFPSHPAQERIQE 611
D+R V T E FGELA++++ A+VRA + LWA++R+ F + + ++
Sbjct: 85 KDNR---FVRTMEDGALFGELAILHHCERTATVRAIESCHLWAIERNVFHAIMMESAREK 141
Query: 612 TQAVR 626
T + +
Sbjct: 142 TMSFK 146
>AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying
defective protein 4,isoform c protein.
Length = 749
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/143 (25%), Positives = 69/143 (48%)
Frame = +3
Query: 150 RRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAM 329
+R A + +P ++ + K+ + +AV+ + L +Q+ ++++ M
Sbjct: 127 QRAKKIAVSAEPTNFENKPATLQHYNKTVGAKQMIRDAVQKNDFLKQLAKEQIIELVNCM 186
Query: 330 FEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYN 509
+E R+ G++VI++G+ GD +V+ G V R ++ GELA++YN
Sbjct: 187 YEMRARAGQWVIQEGEPGDRLFVVAEGELQV-----SREGALLGKMRAGTVMGELAILYN 241
Query: 510 MPWAASVRAQTAGALWAMDRHTF 578
ASV+A T LW +DR F
Sbjct: 242 CTRTASVQALTDVQLWVLDRSVF 264
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 246 ARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL 425
++L + + +F++L ++ ++ D M + + G Y+IRQG+ GD F+VI +G V
Sbjct: 277 SQLMNFLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVT 336
Query: 426 VTGDDRVE-KVVHTYEGSGSFGELALMYNMPWAASVRAQTAGA-LWAMDRHTF 578
+ E + + FGE AL+ A++ AQ G + +DR +F
Sbjct: 337 QQIEGETEPREIRVLNQGDFFGERALLGEEVRTANIIAQAPGVEVLTLDRESF 389
>AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying
defective protein 4,isoform e protein.
Length = 743
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/143 (25%), Positives = 69/143 (48%)
Frame = +3
Query: 150 RRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAM 329
+R A + +P ++ + K+ + +AV+ + L +Q+ ++++ M
Sbjct: 121 QRAKKIAVSAEPTNFENKPATLQHYNKTVGAKQMIRDAVQKNDFLKQLAKEQIIELVNCM 180
Query: 330 FEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYN 509
+E R+ G++VI++G+ GD +V+ G V R ++ GELA++YN
Sbjct: 181 YEMRARAGQWVIQEGEPGDRLFVVAEGELQV-----SREGALLGKMRAGTVMGELAILYN 235
Query: 510 MPWAASVRAQTAGALWAMDRHTF 578
ASV+A T LW +DR F
Sbjct: 236 CTRTASVQALTDVQLWVLDRSVF 258
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 246 ARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL 425
++L + + +F++L ++ ++ D M + + G Y+IRQG+ GD F+VI +G V
Sbjct: 271 SQLMNFLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVT 330
Query: 426 VTGDDRVE-KVVHTYEGSGSFGELALMYNMPWAASVRAQTAGA-LWAMDRHTF 578
+ E + + FGE AL+ A++ AQ G + +DR +F
Sbjct: 331 QQIEGETEPREIRVLNQGDFFGERALLGEEVRTANIIAQAPGVEVLTLDRESF 383
>AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying
defective protein 4,isoform b protein.
Length = 737
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/143 (25%), Positives = 69/143 (48%)
Frame = +3
Query: 150 RRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAM 329
+R A + +P ++ + K+ + +AV+ + L +Q+ ++++ M
Sbjct: 115 QRAKKIAVSAEPTNFENKPATLQHYNKTVGAKQMIRDAVQKNDFLKQLAKEQIIELVNCM 174
Query: 330 FEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYN 509
+E R+ G++VI++G+ GD +V+ G V R ++ GELA++YN
Sbjct: 175 YEMRARAGQWVIQEGEPGDRLFVVAEGELQV-----SREGALLGKMRAGTVMGELAILYN 229
Query: 510 MPWAASVRAQTAGALWAMDRHTF 578
ASV+A T LW +DR F
Sbjct: 230 CTRTASVQALTDVQLWVLDRSVF 252
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 246 ARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL 425
++L + + +F++L ++ ++ D M + + G Y+IRQG+ GD F+VI +G V
Sbjct: 265 SQLMNFLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVT 324
Query: 426 VTGDDRVE-KVVHTYEGSGSFGELALMYNMPWAASVRAQTAGA-LWAMDRHTF 578
+ E + + FGE AL+ A++ AQ G + +DR +F
Sbjct: 325 QQIEGETEPREIRVLNQGDFFGERALLGEEVRTANIIAQAPGVEVLTLDRESF 377
>AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying
defective protein 4,isoform a protein.
Length = 780
Score = 62.1 bits (144), Expect = 3e-10
Identities = 37/143 (25%), Positives = 69/143 (48%)
Frame = +3
Query: 150 RRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAM 329
+R A + +P ++ + K+ + +AV+ + L +Q+ ++++ M
Sbjct: 158 QRAKKIAVSAEPTNFENKPATLQHYNKTVGAKQMIRDAVQKNDFLKQLAKEQIIELVNCM 217
Query: 330 FEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYN 509
+E R+ G++VI++G+ GD +V+ G V R ++ GELA++YN
Sbjct: 218 YEMRARAGQWVIQEGEPGDRLFVVAEGELQV-----SREGALLGKMRAGTVMGELAILYN 272
Query: 510 MPWAASVRAQTAGALWAMDRHTF 578
ASV+A T LW +DR F
Sbjct: 273 CTRTASVQALTDVQLWVLDRSVF 295
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Frame = +3
Query: 246 ARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL 425
++L + + +F++L ++ ++ D M + + G Y+IRQG+ GD F+VI +G V
Sbjct: 308 SQLMNFLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVT 367
Query: 426 VTGDDRVE-KVVHTYEGSGSFGELALMYNMPWAASVRAQTAGA-LWAMDRHTF 578
+ E + + FGE AL+ A++ AQ G + +DR +F
Sbjct: 368 QQIEGETEPREIRVLNQGDFFGERALLGEEVRTANIIAQAPGVEVLTLDRESF 420
>AF067612-6|AAU05568.1| 470|Caenorhabditis elegans Egg laying
defective protein 4,isoform f protein.
Length = 470
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 273 ILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVE- 449
+ +F++L ++ ++ D M + + G Y+IRQG+ GD F+VI +G V + E
Sbjct: 7 VSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVTQQIEGETEP 66
Query: 450 KVVHTYEGSGSFGELALMYNMPWAASVRAQTAGA-LWAMDRHTF 578
+ + FGE AL+ A++ AQ G + +DR +F
Sbjct: 67 REIRVLNQGDFFGERALLGEEVRTANIIAQAPGVEVLTLDRESF 110
>Z19157-1|CAB63418.2| 733|Caenorhabditis elegans Hypothetical
protein ZC84.2 protein.
Length = 733
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 198 SDEGAPAVFP-KSDAQIARLA--EAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIR 368
SD+ V P K A+IA E +R + +F+ +A + +++ + + PG+++ +
Sbjct: 463 SDQQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFICK 522
Query: 369 QGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALM 503
+GD G Y+++ G V+ DD +KV T + FGEL+++
Sbjct: 523 KGDIGREMYIVKRGRLQVV---DDDGKKVFVTLQEGSVFGELSIL 564
>D86922-1|BAA13180.1| 733|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 733
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Frame = +3
Query: 198 SDEGAPAVFP-KSDAQIARLA--EAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIR 368
SD+ V P K A+IA E +R + +F+ +A + +++ + + PG+++ +
Sbjct: 463 SDQQVLKVLPDKLQAEIAMQVHFETLRKVRIFQDCEAGLLAELVLKLQLQVFSPGDFICK 522
Query: 369 QGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALM 503
+GD G Y+++ G V+ DD +KV T + FGEL+++
Sbjct: 523 KGDIGREMYIVKRGRLQVV---DDDGKKVFVTLQEGSVFGELSIL 564
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 40.7 bits (91), Expect = 9e-04
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Frame = +3
Query: 222 FPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAM-FEKRSEPGEYVIRQGDDGDNFYV 398
F +S ++ + E + I L +Q+ + + E+ G V RQG+ G +Y+
Sbjct: 552 FERSPEELEVVYEELTFIKALSHLSTMVKRQLSNFVKVEQYVHAGSVVFRQGEIGVYWYI 611
Query: 399 IENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGALW-AMDRHT 575
+ G +V V G K+V FG+LAL+ ++P AA++ +++ +D+H
Sbjct: 612 VLKGAVEVNVNG-----KIVCLLREGDDFGKLALVNDLPRAATIVTYEDDSMFLVVDKHH 666
Query: 576 F 578
F
Sbjct: 667 F 667
>Z81061-5|CAB02935.4| 695|Caenorhabditis elegans Hypothetical
protein F14H8.6 protein.
Length = 695
Score = 39.5 bits (88), Expect = 0.002
Identities = 32/135 (23%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Frame = +3
Query: 186 EEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVI 365
EE+ ++ P +F + +I + ++ + LF S D + + +++ + + P +Y+
Sbjct: 451 EEEIAEFLPPRLFGEIAVEIHM--DTLKKVKLFESCDPRLLYELILKLQLRVYSPMDYIC 508
Query: 366 RQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPW-------AA 524
++GD G Y+++ G +V V+ D + + T FGEL+++ N+P A
Sbjct: 509 KKGDVGTEMYIVKEGFVEV-VSEDG--QTIFVTLPAGFVFGELSIL-NIPGNKNKNLRTA 564
Query: 525 SVRAQTAGALWAMDR 569
SVR++ L+ +D+
Sbjct: 565 SVRSKGYSDLYVLDK 579
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 273 ILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEK 452
+ LF+ D ++ ++ + PG+ + +GD G Y+I G+ V+ G D EK
Sbjct: 536 VQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDVGKEMYIINQGILQVV--GGDHNEK 593
Query: 453 VVHTYEGSGSFGELALMY---NMPWAASVRAQ 539
+ FGE++L+ N AS+RA+
Sbjct: 594 IFAELAQGAVFGEISLLAIGGNNRRTASIRAK 625
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 273 ILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEK 452
+ LF+ D ++ ++ + PG+ + +GD G Y+I G+ V+ G D EK
Sbjct: 536 VQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDVGKEMYIINQGILQVV--GGDHNEK 593
Query: 453 VVHTYEGSGSFGELALMY---NMPWAASVRAQ 539
+ FGE++L+ N AS+RA+
Sbjct: 594 IFAELAQGAVFGEISLLAIGGNNRRTASIRAK 625
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +3
Query: 273 ILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEK 452
+ LF+ D ++ ++ + PG+ + +GD G Y+I G+ V+ G D EK
Sbjct: 536 VQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDVGKEMYIINQGILQVV--GGDHNEK 593
Query: 453 VVHTYEGSGSFGELALMY---NMPWAASVRAQ 539
+ FGE++L+ N AS+RA+
Sbjct: 594 IFAELAQGAVFGEISLLAIGGNNRRTASIRAK 625
>AL117206-10|CAB60452.2| 258|Caenorhabditis elegans Hypothetical
protein Y67A10A.2 protein.
Length = 258
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 472 PSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSPCLITY 356
P T ++ S+ + TSKTPFS+ L+ +S CL T+
Sbjct: 144 PCTAVTVINSTSTCSSSTSKTPFSIRTPLNQASQCLSTF 182
>AC024753-9|AAF60460.1| 139|Caenorhabditis elegans Hypothetical
protein Y23H5B.2 protein.
Length = 139
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -1
Query: 279 AVCPGPPQRDGLSVRPTWGTRQGLLRQNHPLRGHKSRRKRICAD 148
+ P PP + G+ + ++G R + KS +K++C D
Sbjct: 80 SAAPAPPAKSGVPAKSAEKAKEGSQRSARLKKEQKSEKKKVCVD 123
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -1
Query: 522 PPTAC--CTSGPVRQTN-RNLRMCGPPF 448
PPT+C CTS R T R +R CGP F
Sbjct: 28 PPTSCATCTSNRPRCTPPRRIRQCGPKF 55
>AF067612-5|AAM98011.3| 195|Caenorhabditis elegans Egg laying
defective protein 4,isoform d protein.
Length = 195
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +3
Query: 246 ARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDN 389
++L + + +F++L ++ ++ D M + + G Y+IRQG+ N
Sbjct: 120 SQLMNFLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKVSN 167
>AF039045-2|AAO38660.2| 217|Caenorhabditis elegans Hypothetical
protein F15E11.15a protein.
Length = 217
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 472 PSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSPC 368
P Y W+T ++SPV S T F++ +PS+PC
Sbjct: 20 PVYSWSTCIRKTSPVL-FSSTIFALRRMTAPSAPC 53
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 493 SSPNEPEPSYVWTTFSTRSSPVTRTSKTPFSMT*KLSPSSPCLITYSPGSDLFSNIA--S 320
++P E E V + ST+ S +++ P +++ S IT G D + S
Sbjct: 85 TTPVEEEKVKVSPSSSTKES-FENSAREPVEYEQRITSESSKGITAVTGKDFMKKLGRKS 143
Query: 319 RTCCICCASRE 287
TCC CC ++
Sbjct: 144 PTCCSCCDEKQ 154
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +3
Query: 168 AETY-DPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRS 344
AE+Y E ++ PA F + Q + A + G+ + R ++ + + +K
Sbjct: 162 AESYLGKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDG 221
Query: 345 EPGEYVIRQGDDGDNFYV----IENGVFDVLVTGDD 440
E V G G F V I+NGVF+VL T D
Sbjct: 222 ERNILVFDLG--GGTFDVSMLTIDNGVFEVLATNGD 255
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 29.1 bits (62), Expect = 2.8
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = +3
Query: 168 AETY-DPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRS 344
AE+Y E ++ PA F + Q + A + G+ + R ++ + + +K
Sbjct: 162 AESYLGKEVKNAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDG 221
Query: 345 EPGEYVIRQGDDGDNFYV----IENGVFDVLVTGDD 440
E V G G F V I+NGVF+VL T D
Sbjct: 222 ERNILVFDLG--GGTFDVSMLTIDNGVFEVLATNGD 255
>Z81515-4|CAB04196.1| 739|Caenorhabditis elegans Hypothetical
protein F26H11.4 protein.
Length = 739
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 321 PEPAASAARQENGTAVCPGPPQRDGLSVR--PTWGTRQGLLRQNHPLRGHKS 172
P P S ++ G C GP Q++ S R + R+GLLR L G KS
Sbjct: 189 PPPPLSERKKNVGPKPCVGPAQKNLSSQRKHSSKRNRKGLLRNVAKLWGRKS 240
>Z75526-3|CAA99769.1| 578|Caenorhabditis elegans Hypothetical
protein C06H2.3 protein.
Length = 578
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 168 AETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVR---GILLFRSLDAQQMQQVLDAMFEK 338
+E DP +D D +PA+ PK +A RL + GIL LD Q + +++ +F +
Sbjct: 157 SEKADPSYEDYDARSPAMLPKIEAFKQRLEDLDTWNFGILQIH-LDDQVVSKLIRNLFSR 215
Query: 339 RS 344
S
Sbjct: 216 FS 217
>U80447-8|AAB37812.3| 900|Caenorhabditis elegans Patched related
family protein 10 protein.
Length = 900
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 245 YLCVRLGEHGRGSFVRIILFGV-ISLGENGFAPIVKARHWRLFYKILLRP 99
Y VRL + + +++ L GV ++ G+NG IV+A W L Y++ P
Sbjct: 171 YPTVRLSD--KSAYIASALGGVKLAKGDNGENIIVEATAWLLIYQLKFYP 218
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 547 PAVWARTDAAHGMLYIRASSPNEPEPSYVWTTFSTR 440
P VWA+T + +L AS+P + S+ TT +TR
Sbjct: 340 PPVWAQTAQSKTVLCDCASTPTDTNFSFAPTTSTTR 375
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
protein F09E8.3 protein.
Length = 1369
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 171 ETYDPEEDDSDEGAPAVFPKSDAQIARLAEAV 266
E + +EDD DEG PA K R++ A+
Sbjct: 172 EEKEEDEDDDDEGLPAKLNKLPNNFFRMSRAI 203
>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical
protein T21E8.3 protein.
Length = 1243
Score = 27.5 bits (58), Expect = 8.6
Identities = 30/128 (23%), Positives = 54/128 (42%)
Frame = +3
Query: 141 FNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVL 320
++N ++ F ++ EED + +GA V K+ + E + +L S D + +
Sbjct: 610 YSNLVRAQFFDSQSVEEDINGQGAEEVIQKTPPNLND-GEPLEELLKETSSDIEIKSNIW 668
Query: 321 DAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELAL 500
+ + E R P +++ G I+ F +L + +V TY+ GE L
Sbjct: 669 EVLRECR--PDAFLLSMAVIGS---AIQGCNFPILS------QIIVQTYKAYAMDGENIL 717
Query: 501 MYNMPWAA 524
Y WAA
Sbjct: 718 TYGHFWAA 725
>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical
protein T21E8.3 protein.
Length = 1243
Score = 27.5 bits (58), Expect = 8.6
Identities = 30/128 (23%), Positives = 54/128 (42%)
Frame = +3
Query: 141 FNNRRKSVFAETYDPEEDDSDEGAPAVFPKSDAQIARLAEAVRGILLFRSLDAQQMQQVL 320
++N ++ F ++ EED + +GA V K+ + E + +L S D + +
Sbjct: 610 YSNLVRAQFFDSQSVEEDINGQGAEEVIQKTPPNLND-GEPLEELLKETSSDIEIKSNIW 668
Query: 321 DAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELAL 500
+ + E R P +++ G I+ F +L + +V TY+ GE L
Sbjct: 669 EVLRECR--PDAFLLSMAVIGS---AIQGCNFPILS------QIIVQTYKAYAMDGENIL 717
Query: 501 MYNMPWAA 524
Y WAA
Sbjct: 718 TYGHFWAA 725
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = -3
Query: 553 RAPAVWARTDAAHGMLYI-----RASSPNE--PEPSYVWTTFSTRSSPVTRTSKTPF 404
R A R + AH +Y RA +P PE S V ST S PV+R + PF
Sbjct: 547 RVAAAIYRAETAHRDMYASGTINRAETPGRYFPENSAVLERSSTPSFPVSRATPLPF 603
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = -3
Query: 553 RAPAVWARTDAAHGMLYI-----RASSPNE--PEPSYVWTTFSTRSSPVTRTSKTPF 404
R A R + AH +Y RA +P PE S V ST S PV+R + PF
Sbjct: 547 RVAAAIYRAETAHRDMYASGTINRAETPGRYFPENSAVLERSSTPSFPVSRATPLPF 603
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Frame = -3
Query: 553 RAPAVWARTDAAHGMLYI-----RASSPNE--PEPSYVWTTFSTRSSPVTRTSKTPF 404
R A R + AH +Y RA +P PE S V ST S PV+R + PF
Sbjct: 547 RVAAAIYRAETAHRDMYASGTINRAETPGRYFPENSAVLERSSTPSFPVSRATPLPF 603
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 171 ETYDPEEDDSDEGAPAVFPKSDAQIARLAEAV 266
E + +EDD DEG PA K R++ A+
Sbjct: 172 EEKEEDEDDDDEGLPAKLNKLPNNFFRMSRAI 203
>AF070070-1|AAC70065.1| 933|Caenorhabditis elegans MutS homolog
protein.
Length = 933
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 171 ETYDPEEDDSDEGAPAVFPKSDAQIARLAEAV 266
E + +EDD DEG PA K R++ A+
Sbjct: 172 EEKEEDEDDDDEGLPAKLNKLPNNFFRMSRAI 203
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 547 PAVWARTDAAHGMLYIRASSPNEPEPSYVWTTFSTR 440
P VWA+T + +L AS+P + S+ TT +TR
Sbjct: 340 PPVWAQTAQSKTVLCDCASTPTDTNFSFAPTTSTTR 375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,823
Number of Sequences: 27780
Number of extensions: 356399
Number of successful extensions: 1527
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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