Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5949
(639 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 51 8e-09
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 49 3e-08
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 49 3e-08
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 26 0.35
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 3.3
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 22 5.8
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 22 5.8
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 22 5.8
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 22 5.8
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 22 5.8
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 51.2 bits (117), Expect = 8e-09
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +3
Query: 246 ARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVL 425
A + ++ + +F++L + + ++ D + E G+Y+IRQG GD F++I G V
Sbjct: 209 AEYTDFLKSVPIFKNLPEETLIKISDVLEETFYNNGDYIIRQGARGDTFFIISRGQVRVT 268
Query: 426 VTGDDR-VEKVVHTYEGSGSFGELALMYNMPWAASVRAQTAGAL--WAMDRHTF 578
+ D EK + T FGE AL + A++ A + +DR TF
Sbjct: 269 IKQPDTPEEKYIRTLSKGDFFGEKALQGDDLRTANIIADDPEGVSCLVIDRETF 322
Score = 49.6 bits (113), Expect = 3e-08
Identities = 29/76 (38%), Positives = 39/76 (51%)
Frame = +3
Query: 351 GEYVIRQGDDGDNFYVIENGVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPWAASV 530
G +IR+GD G YV+E G +V G K + T GELA++YN A++
Sbjct: 126 GSTIIREGDVGSIVYVMEEGKVEVSRDG-----KYLSTLAPGKVLGELAILYNCKRTATI 180
Query: 531 RAQTAGALWAMDRHTF 578
A T LWA+DR F
Sbjct: 181 TAATDCQLWAIDRQCF 196
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 49.2 bits (112), Expect = 3e-08
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +3
Query: 264 VRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 443
V + F + D+ + V+ + + +PG+ +I++G G Y I+ G+ D+++ +
Sbjct: 451 VASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKMYFIQEGIVDIVMANGE- 509
Query: 444 VEKVVHTYEGSGS-FGELALMYNMPWAASVRAQTAGALWAMDRHTF----PSHPAQERIQ 608
V T GS FGE+ L+ N ASVRA+T L+++ F +P R
Sbjct: 510 ----VATSLSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTM 565
Query: 609 ETQA 620
E+ A
Sbjct: 566 ESVA 569
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 49.2 bits (112), Expect = 3e-08
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Frame = +3
Query: 264 VRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 443
V + F + D+ + V+ + + +PG+ +I++G G Y I+ G+ D+++ +
Sbjct: 419 VASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKMYFIQEGIVDIVMANGE- 477
Query: 444 VEKVVHTYEGSGS-FGELALMYNMPWAASVRAQTAGALWAMDRHTF----PSHPAQERIQ 608
V T GS FGE+ L+ N ASVRA+T L+++ F +P R
Sbjct: 478 ----VATSLSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTM 533
Query: 609 ETQA 620
E+ A
Sbjct: 534 ESVA 537
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 25.8 bits (54), Expect = 0.35
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 552 ERRRSGPVQMPPTACCTSGPVRQTNRNL 469
E +S + PP C SG + +T +NL
Sbjct: 304 EMNKSKSITEPPKNCADSGSIWETGKNL 331
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 22.6 bits (46), Expect = 3.3
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = -2
Query: 533 PYRCRPRHVVHQGQFAKRTGTFVC 462
P CRPRH + T VC
Sbjct: 519 PSACRPRHEIRSTDVIPGTQEHVC 542
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 5.8
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Frame = +1
Query: 529 YGPRPPALCGPW-----TVTRFRRI 588
YG PP GPW + RFR I
Sbjct: 123 YGNFPPRSMGPWISIQEQIPRFRHI 147
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 5.8
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Frame = +1
Query: 529 YGPRPPALCGPW-----TVTRFRRI 588
YG PP GPW + RFR I
Sbjct: 123 YGNFPPRSMGPWISIQEQIPRFRHI 147
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.8 bits (44), Expect = 5.8
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Frame = +1
Query: 529 YGPRPPALCGPW-----TVTRFRRI 588
YG PP GPW + RFR I
Sbjct: 123 YGNFPPRSMGPWISIQEQIPRFRHI 147
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.8 bits (44), Expect = 5.8
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Frame = +1
Query: 529 YGPRPPALCGPW-----TVTRFRRI 588
YG PP GPW + RFR I
Sbjct: 356 YGNFPPRSMGPWISIQEQIPRFRHI 380
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.8 bits (44), Expect = 5.8
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -1
Query: 603 CALEQDATETCDGPWPTERRRSG 535
C L+ D ++C P P +R G
Sbjct: 608 CVLKTDTNQSCPSP-PVTTKRDG 629
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,277
Number of Sequences: 438
Number of extensions: 4323
Number of successful extensions: 30
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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