Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5947
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    26   6.3  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    26   6.3  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    25   8.4  

>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 570 AEY*YYVFIKKTKEFSYYSLDKDSF 496
           ++Y Y  F+ +  EFS+ +LD D F
Sbjct: 28  SKYVYRYFVHQWPEFSFVALDNDRF 52


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 482 RFPNINYTYFIYLTERRYFEKNIHMNQTKH 393
           RFPN+ Y + I    R+Y+  ++H+ Q K+
Sbjct: 276 RFPNLAYLHAI--EPRQYWNGHVHITQEKN 303


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 356 IFKDAYDFNHLIDVSFDSYVYFFQNI 433
           +FKDAY    +I V  D  +YF  NI
Sbjct: 361 LFKDAYHNELVIRVQPDEAIYFKMNI 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,152
Number of Sequences: 5004
Number of extensions: 60011
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)