Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5946
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 29 0.73
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 28 1.3
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 27 2.2
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 27 2.2
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch... 27 2.2
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.0
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 3.9
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 27 3.9
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 6.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 9.0
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom... 25 9.0
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 29.1 bits (62), Expect = 0.73
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = -3
Query: 194 ASVPFYSQTAERLISPRAPYLYSRPVSLQD*EASLLVHS 78
A+V + A L++P+APY +S V LQD E+ VH+
Sbjct: 790 ATVIISIKMAHLLVTPKAPYSFS--VLLQDPESEFCVHT 826
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +3
Query: 330 LQIFIRTTPALNLKIINQVWLKFTSQASWSDGLGT*YMSDQVMNPTHGSNSGAGTNS 500
L F ++ P + V LK + W +G G + ++NP H SG T +
Sbjct: 237 LDFFKKSPPVPAISKKENVALKMLQRCGWKEGQGLGQHNQGIINPLHVEISGFVTET 293
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/52 (28%), Positives = 20/52 (38%)
Frame = -1
Query: 622 FTAEIGGVVLPTRADSQEVLPPHVRTFHLSIIKVPKQQHTYELVPAPEFEPC 467
F ++L T + LP H F + V Q+H Y L P E C
Sbjct: 433 FGVSTNDILLHTSREELFRLPSHGNLFARLVSHVLHQRHFYPLFPGGSLEKC 484
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 203 DDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSES 367
D+K+ + RA R S + D+EAD + + ++V ++ D+ ES
Sbjct: 635 DEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDES 689
>SPAC1952.15c |rec24|mug6|meiotic recombination protein
Rec24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 350
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 740 VVTGVHRHLQRKRATHLEI*AVRFQYSYNG 651
++T VH +LQ KR T + + +Y++NG
Sbjct: 110 LLTNVHENLQEKRQTSGSLAHLDIEYTFNG 139
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 595 LPTRADSQEVLPPHVRTFHLSIIKVPKQQHTYELVPAPEFEPCVGFIT*SDI 440
LP SQ PP F ++II K QH +L P P E + S+I
Sbjct: 480 LPLLRQSQFTPPPKKPNFEVAIISPKKSQH--KLYPNPVVESVFNDVPYSEI 529
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 599 HPAYFCREAVMRFGLKGSRCNYTETLQLISQGGW 700
HP Y V G S +YT +Q + + GW
Sbjct: 433 HPEYDLNAVVYHHGTSASGGHYTVDVQQLDKSGW 466
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 461 SNTRFKFWGRNQFVCMLLFG 520
SNT F W N + C LLFG
Sbjct: 162 SNTTFSIWSANDYFC-LLFG 180
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 377 YYLQIQSRSRPNKYLKL*VSQSVCSSRLLNLLQRQPAPFALSKPFEPATRP 225
Y +I R +K+ + S+++ SSR Q P + + PF+P +P
Sbjct: 175 YATRINGSLRNDKWNRSSFSEALSSSRFSRPQVGQQQPLSSAFPFQPVKQP 225
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 9.0
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 125 ESKDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIG-G 301
+S+ SE S S +E + + +D ++ ++ +S + + +D
Sbjct: 206 DSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESES 265
Query: 302 SSKQTVKLKASDIYSDDSGSESEDNKS 382
SSK + S DDS S+S D++S
Sbjct: 266 SSKDSDSSSNSSDSEDDSSSDSSDSES 292
>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 482 WGRNQFVCMLLFGNFNDGQM 541
WGRN F+ + + G F GQM
Sbjct: 89 WGRNFFIAVEIVGIFCAGQM 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,119
Number of Sequences: 5004
Number of extensions: 60809
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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