Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5946
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 31 1.3
07_03_1495 + 26983415-26984797 30 1.8
08_01_0602 + 5273930-5274024,5274147-5274450 30 2.3
04_04_0411 - 25014511-25015015,25015098-25015169,25015700-250157... 30 2.3
10_08_0678 + 19835903-19836484 29 3.1
03_02_0582 + 9624481-9626844 29 4.1
02_05_0831 - 32071280-32071403,32071528-32071706,32071786-320718... 29 4.1
02_05_0819 - 32014236-32016059 28 7.1
02_01_0263 + 1743661-1743694,1744939-1745236,1745318-1745417,174... 28 7.1
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 28 9.4
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 28 9.4
03_03_0145 + 14833043-14833113,14833544-14833662,14833834-148339... 28 9.4
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 125 ESKDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGS 304
E++D + S S E K + D+K + A + DAEA
Sbjct: 59 EAEDAKEEGASESEGEAMDVEAKESADEKEEEEAEAEADGDEGEDKSDEMDAEAGAAEEE 118
Query: 305 SKQTVKLKASDIYSDDSGSESE 370
+K+ +LK +++ + +GS+SE
Sbjct: 119 AKEEEELKDAEVEGEGAGSDSE 140
>07_03_1495 + 26983415-26984797
Length = 460
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = +2
Query: 113 EILDESKDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADL 292
E +E EP E + G K E +R V++K + A+ R ++ ADA
Sbjct: 280 EANEEGSKQEPIEEDVERVAGDK-ESERIVEEKE---VEAVEESRGLEKEQQNADAPQPE 335
Query: 293 IGGSSKQTVKLKASDIYSDDSGSESEDNKS 382
+ GSS V + + S + ES D K+
Sbjct: 336 VFGSSMVVVDKREKEEASVSNIEESSDKKA 365
>08_01_0602 + 5273930-5274024,5274147-5274450
Length = 132
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 465 THGSNSGAGTNSYVCCCLGTLMMDK*NVRTCGGSTSCESARVGSTTPP 608
TH S N Y C G L M + +CGG +C+ R G + PP
Sbjct: 6 THDSGDRGSINLY-CASRGRLAML--GLGSCGGVAACQIIRHGCSPPP 50
>04_04_0411 -
25014511-25015015,25015098-25015169,25015700-25015734,
25015805-25015873,25015993-25016044,25016444-25016526,
25016625-25016726,25017150-25017884,25017962-25018012,
25018792-25018983,25019066-25019216,25020012-25020193,
25020329-25020532,25020752-25020859
Length = 846
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 146 SERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSK-QTVK 322
S+ SPL G E K + +AL+ + R R+ + L+ GS+K +T
Sbjct: 706 SQNDDSPLKGKSAENDDEDISKTPKSGSALKNE-GGRSSRSTGKTKDGLLKGSNKDETGN 764
Query: 323 LKASDIYSDDSGSESEDNK 379
K++ +D GS+ +D+K
Sbjct: 765 TKSASKSKNDGGSKHKDSK 783
>10_08_0678 + 19835903-19836484
Length = 193
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 227 AALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSG 385
AAL A+R + APA A AD + ++ A DDS + ED G
Sbjct: 86 AALNFPDAARSRPAPASASADDVRAAATAAAAAMAHQEEDDDSRRQLEDGGGG 138
>03_02_0582 + 9624481-9626844
Length = 787
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 293 IGGSSKQTVKLKASDIYSDDSGSESE 370
+GGS ++V ++ D +SDD GSE +
Sbjct: 90 LGGSKPESVSSESDDHHSDDGGSEGQ 115
>02_05_0831 -
32071280-32071403,32071528-32071706,32071786-32071893,
32071987-32072109,32072480-32072608,32072998-32073281,
32073783-32074094,32074208-32074340
Length = 463
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 203 DDKRQNAMAALRAQRASR---VQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESED 373
D+ +A+ AL Q A ++R P +A A + + ++KAS DSG SE+
Sbjct: 26 DEALADAVDALTLQGADLSGIIKRVPGEAAAAEVSPVMRVLDEVKASSASDSDSGGRSEE 85
Query: 374 NKSGVAQI 397
+ +A +
Sbjct: 86 DAERLASL 93
>02_05_0819 - 32014236-32016059
Length = 607
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 251 SRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSG 385
S + R D ++D+ G + +Q K+ +D + D G +SG
Sbjct: 493 STLYRPKKDGDSDVYGDADEQLEKVMKTDRFKPDKGFSGASERSG 537
>02_01_0263 +
1743661-1743694,1744939-1745236,1745318-1745417,
1745500-1745766,1745859-1745936,1746023-1746124,
1746205-1746254,1746347-1746446,1746550-1746648,
1746742-1746858,1747187-1747313,1747396-1747793,
1747900-1748004
Length = 624
Score = 28.3 bits (60), Expect = 7.1
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +2
Query: 173 GC-KTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSD 349
GC K E+ D N + + AQ A ++ ++ E +I + + ++ SD +
Sbjct: 327 GCLKAEKGPWKDQNILNIVLSGEAQCARQIVTV-SNGEEKIISYAKSKHHTIRGSDTSTA 385
Query: 350 DSGSESEDNKS-GVAQIYIS 406
+SGSE+ED S V + YIS
Sbjct: 386 ESGSEAEDVTSPKVLRSYIS 405
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 392 EPHLI---YYLQIQSRSRPNKYLKL*VSQSVC 306
EPHLI Y++++++R R N + + + SVC
Sbjct: 779 EPHLILGRYFIEVENRFRGNSFPVIIANSSVC 810
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 113 EILDESKDMEPSERSA---SPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAE 283
E++ + + +P R A S L K K+ D+K+ ++Q+AS AP +
Sbjct: 117 EVIQKKRAEKPEVRDAARESALREIKERIKKTKDEKKAKKAEVAKSQKASGKGNAPKPGK 176
Query: 284 ADLIGG 301
+GG
Sbjct: 177 GPKLGG 182
>03_03_0145 +
14833043-14833113,14833544-14833662,14833834-14833991,
14834147-14834587
Length = 262
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 98 PPSPGEILDESKDMEPSERSASPLF 172
PPSPG + + M+PS + S +F
Sbjct: 164 PPSPGTVFPSQQPMQPSPMTTSTVF 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,714,847
Number of Sequences: 37544
Number of extensions: 455977
Number of successful extensions: 1235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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