Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5946
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical pr... 38 0.006
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 33 0.30
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 32 0.39
U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical pr... 32 0.52
Z73977-1|CAA98290.1| 573|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical pr... 28 6.4
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 28 6.4
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 28 6.4
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 28 6.4
CU457737-8|CAM36329.1| 811|Caenorhabditis elegans Hypothetical ... 28 6.4
AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain (... 28 6.4
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 28 8.4
U80439-1|AAB37638.1| 315|Caenorhabditis elegans Hypothetical pr... 28 8.4
>Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical
protein F26A3.5 protein.
Length = 313
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 113 EILDESKDMEPSERSASPLFGCKTERKRAVDDKRQ-NAMAALRAQRASRVQRAPADAEAD 289
++LD S S+RS PL T + VD K+Q N ++++Q R R +AE D
Sbjct: 85 DVLDPSGGSSSSQRSNDPLLPASTFKLSCVDCKKQYNVSKSMKSQARKRKIRQDMEAEDD 144
Query: 290 LIGGSSKQTVKL 325
++ G+ + L
Sbjct: 145 MLDGTGLHRMAL 156
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/104 (22%), Positives = 41/104 (39%)
Frame = +2
Query: 98 PPSPGEILDESKDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPAD 277
P P E K E E++ E K VDD++ R A+ + AP+
Sbjct: 144 PAEPKEPEPAQKQAEQPEQAEEKQETKDAEPKEQVDDRQTEEAVHARRAPAAAEEPAPST 203
Query: 278 AEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSGVAQIYISS 409
++AD + + +K S+ +++ + S D + I S
Sbjct: 204 SKADAVEEKRSEQQSMKPSESTEENTTTTSADGLLHCEYVIIGS 247
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +2
Query: 182 TERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGS 361
T++KRAVDD + ++ +A + AE+ + K+K D S DS S
Sbjct: 691 TDQKRAVDDSSDESARLVKQIKALSATPSSTPAESSKRKQKDTSSRKMKQLDESSADSDS 750
Query: 362 ESEDNKSG 385
E +D +SG
Sbjct: 751 E-DDGRSG 757
>U41992-7|AAA83358.1| 374|Caenorhabditis elegans Hypothetical
protein F32E10.6 protein.
Length = 374
Score = 31.9 bits (69), Expect = 0.52
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Frame = +2
Query: 113 EILDESKDMEPSERSASPLFGCKTERKRAVDDKR-QNAMAALRAQRASRVQRAPADAEAD 289
E++ K + S+R+ +P + E + K+ +++ + +++RA D E +
Sbjct: 258 EVVKTPKKTKKSKRAETPEEEDEVEEEVVKTPKKSKSSKSPKKSKRAETSDEEDEDEEDE 317
Query: 290 LIGG-SSKQTVKLKASDIYSDDSGSESE--DNKSG 385
SSK+ K K+S ++DSG+E E DN SG
Sbjct: 318 KEAPKSSKKQEKAKSSKRVAEDSGNEEEDQDNTSG 352
>Z73977-1|CAA98290.1| 573|Caenorhabditis elegans Hypothetical
protein T28B11.1 protein.
Length = 573
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/84 (28%), Positives = 42/84 (50%)
Frame = +2
Query: 131 KDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSK 310
+DME ER+ S L C+ + K + D+R+ + + SR+ R P ++E+ G +S
Sbjct: 53 EDME-DERAES-LRSCQ-KAKIFICDRRRAILEGVSTVTPSRLPRTPKNSESSDSGSASS 109
Query: 311 QTVKLKASDIYSDDSGSESEDNKS 382
++ +S DS S S K+
Sbjct: 110 SSIASTSSS--EADSVSSSSKTKT 131
>Z68297-2|CAA92594.3| 522|Caenorhabditis elegans Hypothetical
protein F11A10.3 protein.
Length = 522
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 209 KRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSGV 388
+R A ++ S + AD+E D G S+ QT KLK + S + G + K G
Sbjct: 21 RRSTTGAPSSKKKRSPEPESDADSEDDYDGPSTSQTKKLKRGN-SSTNRGKAANKTKRGS 79
Query: 389 AQI 397
Q+
Sbjct: 80 FQV 82
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 218 NAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSGVAQ 394
+++++ R+ S + + D+EAD + +K + +S D GS+SE + V+Q
Sbjct: 612 SSLSSGRSSPDSSLSTSAVDSEADFARLADNLALKSNSQGAFSFDHGSDSEYESTPVSQ 670
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 218 NAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSGVAQ 394
+++++ R+ S + + D+EAD + +K + +S D GS+SE + V+Q
Sbjct: 612 SSLSSGRSSPDSSLSTSAVDSEADFARLADNLALKSNSQGAFSFDHGSDSEYESTPVSQ 670
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 218 NAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSDDSGSESEDNKSGVAQ 394
+++++ R+ S + + D+EAD + +K + +S D GS+SE + V+Q
Sbjct: 612 SSLSSGRSSPDSSLSTSAVDSEADFARLADNLALKSNSQGAFSFDHGSDSEYESTPVSQ 670
>CU457737-8|CAM36329.1| 811|Caenorhabditis elegans Hypothetical
protein C52D10.12 protein.
Length = 811
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 556 HVRTFHLSIIKVPKQQHTYELVPAPEFEP 470
H TFHL++ +P+ H Y++ P+ P
Sbjct: 142 HKATFHLTLKLLPEMVHAYKMCVKPKVAP 170
>AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 19 protein.
Length = 439
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/72 (23%), Positives = 31/72 (43%)
Frame = +2
Query: 170 FGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSD 349
F + ++ +DD++ A+ + V PA AE L+ K+ + + D Y++
Sbjct: 360 FEVEFPKEHFLDDEKAYAVLKSCFPTSKVVNVTPAAAEVSLMEYDEKKYSRGRGGDAYNE 419
Query: 350 DSGSESEDNKSG 385
DS E G
Sbjct: 420 DSDEEQHGGHHG 431
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/89 (20%), Positives = 44/89 (49%)
Frame = +2
Query: 113 EILDESKDMEPSERSASPLFGCKTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADL 292
+ L ++ ++ +R + L G +++ +R + +++ A+ R S A A L
Sbjct: 245 QALRDAAQLKQIDRQKAALSGRESKHERMLLRQQRQAIVGKRGMVVSE-----NGATATL 299
Query: 293 IGGSSKQTVKLKASDIYSDDSGSESEDNK 379
+G ++ K K ++ D GS+++D++
Sbjct: 300 LGFINQSQKKSKVDELIEDMEGSDNDDDR 328
>U80439-1|AAB37638.1| 315|Caenorhabditis elegans Hypothetical
protein C01G8.1 protein.
Length = 315
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 179 KTERKRAVDDKRQNAMAALRAQRASRVQRAPADAEADLIGGSSKQTVKLKASDIYSD 349
K+ERK A +K+++ +A A V APAD + G + Q ++ + +D
Sbjct: 40 KSERKAAKKEKKRSQLADTSAPAIFHVPTAPADIVTEGEGSTVGQGSEIDRRTVITD 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,716,254
Number of Sequences: 27780
Number of extensions: 361302
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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