Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5943
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0004 - 133130-133897                                             31   0.93 
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721...    28   6.6  
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39...    28   8.7  

>09_01_0004 - 133130-133897
          Length = 255

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 203 RQCRARRRWKPRATGRVRGE--TRRC 132
           R    +RRW+P A GR RG+  TRRC
Sbjct: 24  RTVTRKRRWQPAAAGRRRGQRGTRRC 49


>01_07_0230 +
           42170382-42170408,42170532-42170648,42171930-42172119,
           42172250-42172369,42172448-42172740,42172872-42172966,
           42173075-42173181,42173514-42173602,42173809-42173895,
           42174053-42174077,42174659-42174966,42175352-42175657
          Length = 587

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 235 RLASFT*IWRH*GGLE*NDSHDLVDYKSGQIIGATTRVTKSIMRRWRS 378
           R ASF   W   G       HD V ++ G I  A  R  K I+ +W S
Sbjct: 210 RKASFRLSWGCNGDKNGQHKHDFVSFEKGDITTA-ERSNKQILLKWES 256


>03_01_0047 +
           391689-392738,392832-392999,393091-393195,393529-393611,
           393899-394364
          Length = 623

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 148 PRTRPVARGFQRRRALHCLRFSAQ 219
           PR RP+A G +R R L C R  A+
Sbjct: 499 PRRRPMAHGLRRCRQLACARTRAE 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,251,699
Number of Sequences: 37544
Number of extensions: 252570
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)