Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5943
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   9.0  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 KSIMRRWRSVSLKYKTASRSFFCAIVRKYHSRC 450
           K   RR     ++Y+  +++  C+I+R   +RC
Sbjct: 88  KGFFRRSIQQKIQYRPCTKNQQCSILRINRNRC 120


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 523 ISSVP*TSPDVYVYLKLHIAKHRHSIYYGISSLSHRKMTGMR 398
           ++SVP    D+ +   L + ++R S +Y  S  +  ++TG+R
Sbjct: 443 LTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLR 484


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/54 (20%), Positives = 20/54 (37%)
 Frame = -2

Query: 562 TGRRGNYKGRRTRISSVP*TSPDVYVYLKLHIAKHRHSIYYGISSLSHRKMTGM 401
           TG    + G     S    T+  +Y Y+    A H H     +++ +    + M
Sbjct: 65  TGSSPQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSM 118


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +1

Query: 349 TKSIMRRWRSVSLKYKTASRSFFCAIVRKYHSRC 450
           ++   RR     ++Y+  +++  C+I+R   +RC
Sbjct: 38  SQGFFRRSIQQKIQYRPCTKNQQCSILRINRNRC 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,436
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)