Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5942
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 30 1.6
11_06_0030 - 19415263-19415388,19415649-19415728,19416196-194162... 30 2.1
09_02_0112 - 4396756-4397406,4397514-4397717 30 2.1
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 29 2.8
02_01_0035 - 220036-221419,222050-222801 29 3.6
03_05_0431 + 24221881-24224586 29 4.8
02_04_0518 + 23601355-23602498,23603481-23603779 28 6.4
10_01_0159 - 1807806-1809386 28 8.4
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 28 8.4
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 28 8.4
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 416 AKESDGTNGGGVCAPTTEW---DARSDVRRATPFEE 514
++E G GGG P ++ D+RS RR+T F+E
Sbjct: 3 SREESGNGGGGGATPAADYRSSDSRSSSRRSTRFKE 38
>11_06_0030 -
19415263-19415388,19415649-19415728,19416196-19416232,
19416338-19416460,19417195-19417242,19417335-19417378,
19417461-19417506,19417581-19417623,19418329-19418422,
19418503-19418604,19419936-19420014,19420698-19420964
Length = 362
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 582 SHHGTVVPGSGE*TSTPRKAQRCSSKGVALRTSLRASHSV 463
+HH V G+G+ STPRK C + +L + HS+
Sbjct: 108 NHHSCAVTGAGKVVSTPRKVD-CLADARVKMVALGSEHSI 146
>09_02_0112 - 4396756-4397406,4397514-4397717
Length = 284
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 608 LHRRLQIAVATMGQWFPEVANRHQPHEKRSGALQ 507
+HR L V +G WFP R Q E + G +Q
Sbjct: 100 VHRHLPDTVLVVGAWFPHHGRRPQEGELQRGGVQ 133
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/66 (31%), Positives = 27/66 (40%)
Frame = -1
Query: 672 DPSSALRR*HGYLLLV*EDVAASSATPDRSSHHGTVVPGSGE*TSTPRKAQRCSSKGVAL 493
DP++A R GY ++ + SA TSTPR A RC+S A
Sbjct: 201 DPTAAAARSEGYKSVLGSKASEDSAGRAMGGPRTGGSASDTRTTSTPRSAPRCASARAAS 260
Query: 492 RTSLRA 475
R S A
Sbjct: 261 RRSSAA 266
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -2
Query: 686 PRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFPEVANRHQPHEKRSGALQ 507
P+ P HLA F I ++ LLH+ Q F E + HQ H+++
Sbjct: 74 PQMPP-HLAHFGGAGGIPFT---QQLLHQAAAAGHHPHLQLFHE-QHHHQKHQQQPPPPA 128
Query: 506 KGSPSEHHFEHP 471
+ +P HH HP
Sbjct: 129 RWAPQHHHHHHP 140
>03_05_0431 + 24221881-24224586
Length = 901
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 318 ARSRTVFIWG-RNVIPLSRVTPRYLTFETHGMG 413
AR+RTVF WG +V + + PR + F++ G G
Sbjct: 175 ARNRTVFCWGDESVSGVIGLAPRNVRFQSIGAG 207
>02_04_0518 + 23601355-23602498,23603481-23603779
Length = 480
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -1
Query: 606 SSATPDRSSHHGTVVPGSGE*TSTPRKAQRCSSKG 502
+S+TPD+S T V SG STPR AQR + G
Sbjct: 352 TSSTPDQS----TPVSHSGASISTPRTAQRLAKSG 382
>10_01_0159 - 1807806-1809386
Length = 526
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -3
Query: 595 SRSQ*PPWDSGSRKWRIDINPTKSAAVLFK---RGRPPNITSSIPLRSRRANTSAVSPIT 425
S S P WDSG++ W ID+ + S ++ K N++S P + RA + S +
Sbjct: 370 SPSSVPDWDSGNQGW-IDVLSSVSISIANKLETATAADNVSSECPAKWVRAMACSPSSVP 428
Query: 424 LFGQPIPWV 398
+ W+
Sbjct: 429 DWDSDQGWI 437
>04_01_0568 -
7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 27.9 bits (59), Expect = 8.4
Identities = 24/76 (31%), Positives = 32/76 (42%)
Frame = +3
Query: 354 VIPLSRVTPRYLTFETHGMGWPKRVMGLTAEVFARLLRSGMLEVMFGGRPLLKSTAALFV 533
V P R Y F ++ WP + G V L S V+ L AA++V
Sbjct: 267 VSPAHRAEASYARFVSN---WPAQ--GSRYPVGVALWLSFWPRVLLTAALGLVRLAAMYV 321
Query: 534 GLMSIRHFREPLSHGG 581
G I HF + +SHGG
Sbjct: 322 GPSLINHFVDFISHGG 337
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 551 PLPGTTVPWWLLRSGVADEAATSS 622
P+P T++PWWL + + +SS
Sbjct: 2 PMPATSLPWWLSTTACSPPPPSSS 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,696,357
Number of Sequences: 37544
Number of extensions: 512469
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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