Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5942
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    43   2e-04
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    40   0.002
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    37   0.016
AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical ...    29   3.3  
AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    28   5.7  

>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 49/97 (50%)
 Frame = -3

Query: 424 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 245
           L G PI   +  + LG  +   + F  H K   + A F L  ++    + +K  +   + 
Sbjct: 136 LDGYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---IL 192

Query: 244 LYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFCR 134
           LYKT IRP + Y +VV + + ++  K+++ +Q+ F R
Sbjct: 193 LYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/97 (26%), Positives = 49/97 (50%)
 Frame = -3

Query: 424 LFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVT 245
           L G PI   +  + LG  +   + F  H +   + A F L  ++    + +K  +   + 
Sbjct: 166 LDGYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFNKYSTSNKKLM---IL 222

Query: 244 LYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFCR 134
           LYKT IRP + Y +VV + + ++  K+++ +Q+ F R
Sbjct: 223 LYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 26/84 (30%), Positives = 41/84 (48%)
 Frame = -3

Query: 412 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 233
           PI   +  + LG+  D  +TF+PHIK +    +  L R   +L S   L       L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244

Query: 232 CIRPVMTYASVVFAHSARTHLKSL 161
            I P++ Y S V++    + L +L
Sbjct: 245 YILPLIEYGSAVYSPKPSSSLSTL 268


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = -3

Query: 493  PNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAA 314
            P  ++ + L +R  N S     ++ G PI   S V+ LG+  D  + F  HI  V   + 
Sbjct: 946  PTKSALLALGTRNKNQS----YSVDGVPITPSSTVRDLGLITDCKLKFEHHIVKV---SC 998

Query: 313  FILGRLYPMLCSRSKLSLRNKVTLYKTCIRPVMTYASVVFA-HS 185
              + R   +L + S  S +    LYKT + P+M Y S V+A HS
Sbjct: 999  LAMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYAPHS 1042


>AC006714-6|AAN84810.2|  339|Caenorhabditis elegans Hypothetical
           protein Y119D3B.12a protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/127 (21%), Positives = 49/127 (38%)
 Frame = -2

Query: 695 NDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFPEVANRHQPHEKRSG 516
           ND P+  + HL        ++ + +++S   + +++ + T  Q       R +      G
Sbjct: 217 NDAPQRVDDHLT-----GKLHIAYQQISDTIKTIELEMQTSQQKAEMKRKRSRSRSTDRG 271

Query: 515 ALQKGSPSEHHFEHPTP**ARKHLRR*SHHSLWPAHTVGLEGQISRRHPRQRDDIPSPYK 336
           A +K S  +HH  H +    R H  R  H      H    E +   RH  +R +     +
Sbjct: 272 ADRKRSTEQHHHSHRSSRDHRDHRHR-DHRGEHREHREHKEHRRDDRHRSERSERSERSE 330

Query: 335 NGTRPRR 315
              R R+
Sbjct: 331 RSDRERK 337


>AL117193-9|CAB60302.2|  737|Caenorhabditis elegans Hypothetical
           protein Y105C5A.15 protein.
          Length = 737

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 537 LMSIRHFREPLSHGGYCDLESPMKQRHLPTRVVDSRVIGE 656
           +++ R+ +EPLS G  CD E   K+R   + + D +V  E
Sbjct: 616 ILNPRNPKEPLSRGSSCDGEPHRKRRMFLSSLEDDQVTDE 655


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/75 (22%), Positives = 34/75 (45%)
 Frame = -2

Query: 710 FSL*INDIPRSPETHLALFADDTAIYYSCRKMSLLHRRLQIAVATMGQWFPEVANRHQPH 531
           F+  + D+P   +T L  +ADD +I    +K+     ++Q+ +  + ++  E        
Sbjct: 544 FTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKE-RGMSISA 602

Query: 530 EKRSGALQKGSPSEH 486
           EK +  +    P EH
Sbjct: 603 EKSTVTVFSCDPKEH 617


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,904
Number of Sequences: 27780
Number of extensions: 384147
Number of successful extensions: 798
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)