Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5941
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 31 0.24
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 29 0.96
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.2
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 27 2.9
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.9
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 2.9
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 5.1
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch... 26 5.1
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 5.1
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 6.7
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 6.7
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 26 6.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.7
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 8.9
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 34 GVDVGNDINYDTGMPLEMNKNS 99
GVD+GNDI+ + G+PL+ N +
Sbjct: 23 GVDLGNDIDLEKGLPLKYNSEN 44
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.96
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 64 DTGMPLEMN-KNSFHNSHNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYLKPSAPHK 240
D+G ++ + S +S N P F ++G + D+D + SP + S+P+
Sbjct: 60 DSGYRMDSSLMTSLPHSRNPPIFEAIQGEQPSDIDTLNLKKVKSGPTSPSSIDRLSSPNA 119
Query: 241 NHGDFILS 264
GD + S
Sbjct: 120 KAGDILAS 127
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 510 PFFSALGVIVVSFFSQSCVWHDYLNKLWFIRFNWL 406
PF L + S SQS +W++Y + W + F W+
Sbjct: 200 PFIGGL-MAKSSMKSQSDIWNEYTSGNWLMAFIWV 233
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 136 LRGVKDEDVDKYRTENNLQNIDSPLLYLK 222
+R VKDED++ Y+ L N + LL LK
Sbjct: 714 MREVKDEDLEFYKKWEKLLNQEERLLLLK 742
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -1
Query: 591 ILFGSGKNAFFMGWNIPWLEFFFRYYRPFFSALGVIVVSFFSQSCVWHDYLNKLWFIRFN 412
+L G + F NI F PF + + + S++ VW+ Y W + F
Sbjct: 212 LLVGQNRRTFLATMNILAQTLGFMA-GPFLGGI-LAKATIHSKNAVWNQYTVASWVMLFM 269
Query: 411 WLF 403
W F
Sbjct: 270 WFF 272
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 304 DDAPSTTIAPKPPTLTSWDESRTDYSHSLSPPAE-EPVKSNKPKFVQIIVPYTTLRKE 474
+ APS+T P P D ++S PA+ EPVK +KPK + P + R E
Sbjct: 170 ESAPSST-KPAP------DAKEPEFSSPKPKPAKSEPVKQSKPKATETARPSSFSRNE 220
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 307 DAPSTTIAPKPPTLTSWDESRTDYSHSLSPPAEEPVKSNK 426
++ +TT A PP SW+ D EEP KS +
Sbjct: 3 ESTATTTAVPPPAEESWNADSEDVHQFYWTYTEEPHKSRR 42
>SPAC22F8.12c |shf1||small histone ubiquitination factor
Shf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 165
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 46 GNDINYDTGMPLEMNKNSFHNS--HNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYL 219
GND Y + + +++NSF+ S ++ S+ D + N + +SP Y
Sbjct: 12 GNDHQYRSPLKSNVDQNSFYESSYRSRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYR 71
Query: 220 KPS 228
PS
Sbjct: 72 VPS 74
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 64 DTGMPLEMNKNSFHNSHNKPSFADLRGVKDEDVDKYRTENNLQN 195
DT P + KN+ ++ N P+ +++ K ++T N+Q+
Sbjct: 419 DTKWPQNLAKNNINSEPNTPTKSNIDTGKAHSARAHKTRKNIQS 462
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 112 HNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYLKPSA 231
+N+ S +G D D RT + +N++SP PS+
Sbjct: 569 YNRSSSQTSKGYNSSDYDLLRTHSLDENVNSPTSISSPSS 608
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -1
Query: 555 GWNIPWLEFFFRYYRPFFSALGVIVVSFFSQSCVW 451
GWN PW RY+ S LG V F ++ W
Sbjct: 29 GWNDPWSPHSSRYHWQLHSNLGESAV--FDENDFW 61
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 103 HNSHNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLLYLKPSAPHKNHGDF 255
H+SH+ S + + + + ++ ++ +++P YLK P NH DF
Sbjct: 34 HHSHDSSSNSSSEAARLQFIQEHGHSHDA--METPGSYLKRELPQFNHRDF 82
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 283 ENEYEIYDDAPSTTIAPKPPTLTSWDESRTDYSH 384
+N I+D + ++P+ L SW ++ YSH
Sbjct: 289 DNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSH 322
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 650 KIN*ARPILSIISMRGEKRLLILLNYNIPSMDWTEPG 760
K N + SII M +KR+++ +N P D + G
Sbjct: 751 KFNEYEMVESIILMNDDKRVVVGTGFNFPDQDAPDSG 787
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 181 NNLQNIDSPLLYLKPSAPHKNHGD 252
NNL + SPLL+ +PS P H D
Sbjct: 407 NNLIDDSSPLLWREPSFPLIEHHD 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.310 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,941
Number of Sequences: 5004
Number of extensions: 70194
Number of successful extensions: 150
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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