Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5941
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 32 0.57
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 31 0.76
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 31 1.3
01_03_0159 - 13325949-13326839 30 1.7
04_04_0592 + 26477974-26479311 30 2.3
10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257 29 3.1
06_01_0653 - 4720913-4721152,4721898-4721966,4722059-4722124,472... 29 4.0
04_04_1266 + 32239451-32239829,32239874-32239884 29 5.3
02_04_0404 + 22626709-22628601 29 5.3
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 28 7.1
11_01_0311 + 2322511-2323527 28 9.3
10_08_0066 + 14610220-14610798,14610928-14611287 28 9.3
09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895... 28 9.3
04_04_1349 - 32811733-32813040 28 9.3
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 199 DSPLLYL-KPSAPHKNHGDFILSLSTPRAENEYEIYDDAPSTTIAPKPPTLTSWDESRTD 375
D+P ++L + ++H + TP +E + DDA + T+AP P ++ E
Sbjct: 613 DAPFIWLNREPTETRSHAAAV----TPTRPDEVILKDDASNKTVAPSLPNSSARSEETLK 668
Query: 376 YSHSLSPPAEEPV 414
+ S+ P + PV
Sbjct: 669 TAASIDEPTQVPV 681
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -1
Query: 558 MGWNIPWLEFFFRYYRPFFSALGVIVVSFFSQSCVWHDYLNKLWFIRFN--WLFGRWRQT 385
MGW IP E + R ++ V V FF+ + + +L L +RF + FG W
Sbjct: 391 MGWLIP-SEVYPLAVRSAAQSVTVAVNMFFT-AFISQIFLTLLCHLRFGLFYFFGAWVLL 448
Query: 384 MTVICSTFIP 355
MTV +T +P
Sbjct: 449 MTVFIATLLP 458
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 1/126 (0%)
Frame = +1
Query: 190 QNIDSPLLYLKPSAPHKNHGDFILSLSTPRAENEYEIYDDAPSTTIAPKPPTLTSWDESR 369
+ D+P L PH+ + S PRA + Y D T P ++ D
Sbjct: 207 EKADAPGQQLAIVLPHQ-----VNSSLAPRASQPVQQYKD--QTVQQPPSSSVPQQDRYV 259
Query: 370 TDYSHSLSPPAEEP-VKSNKPKFVQIIVPYTTLRKEADNDYPQGTKEWSIISEKEFQPRN 546
+ P + P ++ + + VQ V Y +R A D P + + QP++
Sbjct: 260 LSQAIVYYPQRQAPGIQDTQGQQVQPEVQYLPVRPSATQDVPVHASSQQSQAANQTQPQS 319
Query: 547 IPPHKE 564
PP+++
Sbjct: 320 FPPYQQ 325
>01_03_0159 - 13325949-13326839
Length = 296
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 268 STPRAENEYEIYDDAPST--TIAPKPPTLTSWDESRTDYSHSLSPPAEEPVK 417
STP +E + YD+ T +AP P+ SW+E ++ + P EPV+
Sbjct: 65 STPSSELLQDWYDEFEITYGAVAPPSPSTISWEEPQSSPTGWWPSPNGEPVQ 116
>04_04_0592 + 26477974-26479311
Length = 445
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 316 STTIAPKPPTL-TSWDESRTDYSHSLSPPAEEPVKSNKP 429
+TT+A PPTL S D+S + H+ SPP P + P
Sbjct: 60 TTTVAAAPPTLDVSMDKSLRAF-HASSPPPPTPTTTTTP 97
>10_07_0188 + 13921731-13921938,13922076-13922338,13922463-13923257
Length = 421
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = +1
Query: 274 PRAENEYEIYDDAPSTTIAPKPP----TLTSWDESRTDYSHSLSPPAEEPVKSNKPKFVQ 441
P A Y+ + + P PP TL + TD+ S + A PV +NKP
Sbjct: 247 PSAPGSYDCCYASTFSRPPPPPPIAASTLDKAPITSTDHGASTNTSAATPVANNKPPPPP 306
Query: 442 IIVPYTTLRKEAD 480
+ TTL K+ +
Sbjct: 307 VAATATTLGKKGE 319
>06_01_0653 -
4720913-4721152,4721898-4721966,4722059-4722124,
4722814-4722879,4723001-4723162,4723255-4723347,
4723449-4723541,4723626-4724273
Length = 478
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 551 HPIKKAFLP---LPNNILHLQQLQKIRSRR 631
HP+ LP LPNN+L LQQLQ + R
Sbjct: 74 HPLSGQILPKGELPNNLLDLQQLQNSSNLR 103
>04_04_1266 + 32239451-32239829,32239874-32239884
Length = 129
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 289 EYEIYDDAPSTTIAPKPPTLTSWDESRTDYSHSLSPPAEEPVKS 420
+Y I D PS +P TLT++ +R +Y+ S P S
Sbjct: 33 DYSIRRDRPSFKTSPSRKTLTNYRRTRVNYTSSTRQSISWPTAS 76
>02_04_0404 + 22626709-22628601
Length = 630
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 223 PSAPHKNHGDFIL---SLSTPRAENEYEIYDDAPSTTIAPKPPTL--TSWDESRTDYSHS 387
P HKNHG+ I+ S S+P ++++ + + S++ + + + DES +H+
Sbjct: 394 PVVLHKNHGEIIISNSSSSSPSSDSDSDSNSSSSSSSSSSSSSSSSDSDSDESAAAATHA 453
Query: 388 LSPPAEEPVKSNKP 429
+ P V S +P
Sbjct: 454 PAIPTNACVSSAQP 467
>04_04_1477 + 33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 28.3 bits (60), Expect = 7.1
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Frame = +1
Query: 43 VGNDINYDTGMPLEMNKNSFHNSHNKPSFADLRGVKDEDVDKYRTENNLQNIDSPLL-YL 219
VG+ + G PL ++ +F SH PS K + ++ + +++ SP +
Sbjct: 786 VGSYVKTPEGTPL--SRTTFAESHGTPSSEVSVNTKKSKSKRPKSHVSKRSLTSPSSDSV 843
Query: 220 KPSAPHKNHGDFILSLSTPRAENEYEIYDDAPSTTIAPKPPTLTSWDES-RTDYSHSLSP 396
S+ D+ L + + + D P + + P+ + ES R S S+SP
Sbjct: 844 GRSSMDNLSKDYRLGRRESSGKVKSDHVDQEPRISNSTPLPSYMQFTESARAKASASVSP 903
Query: 397 PAEEPVKSNKPK 432
V+ N P+
Sbjct: 904 KLSPDVQDNNPR 915
>11_01_0311 + 2322511-2323527
Length = 338
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 304 DDAPSTTIAPKPPTLTSWDESRTDYSHSLSPPAEEPV 414
D++ +TT P PP WD + Y + S P EPV
Sbjct: 129 DESGTTTPPPPPPLALFWDLTAARYDPAASSP--EPV 163
>10_08_0066 + 14610220-14610798,14610928-14611287
Length = 312
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 199 DSPLLYLKPSAPHKNHGDFILSLSTPRAENEYEIY 303
++PL+ + PS H+ GD +LS E + E++
Sbjct: 163 ETPLIVVPPSDMHRQFGDLLLSKQGVDVEFQVEVF 197
>09_04_0746 -
19888479-19888622,19888739-19888867,19889061-19889548,
19889666-19889843,19889920-19889991,19890993-19891193
Length = 403
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 259 LSLSTPRAENEYEIYDDAPSTTIAPKPPTLTS 354
L LS PR N ++ + +TT P PPT+ S
Sbjct: 33 LELSAPRGTNPFQSAAFSSTTTGDPPPPTMDS 64
>04_04_1349 - 32811733-32813040
Length = 435
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 328 APKPPTLTSWDESRTDYSHSLSPPA-EEPVKSNKPKFVQII 447
AP PP +SW SHSL A + + ++P F Q++
Sbjct: 98 APSPPLPSSWFLRLLSESHSLPDSAWRDAFRMSRPAFFQLL 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.130 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,533,893
Number of Sequences: 37544
Number of extensions: 412129
Number of successful extensions: 867
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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