Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5940
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    26   4.5  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   7.8  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   7.8  

>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 474 NSSQNCQTQASSFQIEDCTEAQKDW-GLRDKKK 569
           NSSQ   TQ +    +D  EA+++W G+ D  K
Sbjct: 474 NSSQKVATQQTEGSDQDGEEAEEEWHGISDDGK 506


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 502 AWVWQFWLLL 473
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 502 AWVWQFWLLL 473
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.128    0.282 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,587
Number of Sequences: 5004
Number of extensions: 8146
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)